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Search Condition:   Beamline(NE3A)
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No.Publication No.Proposal No.BeamlineTitleAuthorLanguageJournalPublication YearVolumePage
15HP0-W14V 2020G681, 2022G031 NE3A Molecular mechanism of Fe3+ binding inhibition to Vibrio metschnikovii ferric ion-binding protein, FbpA, by rosmarinic acid and its hydrolysate, danshensu Lu, Peng 英語 / English Protein Science 2024 33
2CKCZ-XMV4 2014G087; 2014R-40; 2015G019; 2015G020; 2015R-36; 2016G083; 2016R-69 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; 1A/1A; 5A/ 5A; NW12A/NW12A Bifidobacterial GH146 β-L-arabinofuranosidase for the removal of β1,3-L-arabinofuranosides on plant glycans 丸山 瞬/Shun MARUYAMA; 伏信 進矢/Shinya FUSHINOBU 英語 / English Applied Microbiology and Biotechnology 2024 108
3HM7T-7AFB NE3A Discovery of a Hidden Trypanosoma cruzi Spermidine Synthase Binding Site and Inhibitors through In Silico, In Vitro, and X-ray Crystallography Yoshino, Ryunosuke 英語 / English ACS Omega 2023 8 25850
4DUHJ-4GHY 2017G524 NW12A, NE3A Juglone, a plant-derived 1,4-naphthoquinone, binds to hydroxylamine oxidoreductase and inhibits the electron transfer to cytochrome c554 Akutsu, Yukie 英語 / English Applied and Environmental Microbiology 2023 89
5V5SC-78GG 2022G538; 2020G580 NE3A/NE3A; 5A/ 5A X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose 神鳥 成弘/Shigehiro KAMITORI 英語 / English Biochemical and Biophysical Research Communications 2023 682 187
6VCKV-VFKG 2018G658; 2018RP-21; 2019RP-02; 2020RP-19; 2021PF-B007; 2022PF-B004; 2022G663 5A/ 5A; NE3A/NE3A; 17A/17A; 17A/17A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; 17A/17A; 5A/ 5A; NW12A/NW12A Current Clinical Trial Status and Future Prospects of PPAR-Targeted Drugs for Treating Nonalcoholic Fatty Liver Disease 鎌田 祥太郎/Shotaro KAMATA 英語 / English Biomolecules 2023 13
7RXZH-D5G5 2018G505; 2020G514; 2019RP-03; 2020RP-16 17A/17A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A; 17A/17A; NW12A/NW12A Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases 藤城 貴史/Takashi FUJISHIRO; 高岡 恭世/Kyosei TAKAOKA 英語 / English Nature Communications 2023 14
85MMB-VSXR 2021G519; 2019G508; 2017G513 5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 17A/17A Characterization and alteration of product specificity of Beijerinckia indica subsp. indica β-fructosyltransferase LI DING/DING LI; 宮坂 祐希/Yuki MIYASAKA; 窪田 有紗/Arisa KUBOTA; 西河 淳/Atsushi NISHIKAWA; 殿塚 隆史/Takashi TONOZUKA 英語 / English Bioscience Biotechnology and Biochemistry 2023 87 981
9GUP2-RB0Y 2017G167; 2019G027; 2021G031 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; 17A/17A Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition 中村 照也/Teruya NAKAMURA; 山縣 ゆり子/Yuriko YAMAGATA 英語 / English FEBS Letters 2023 597 1770
10B8EC-VSPW 2018G520; 2022G603 5A/ 5A; NE3A/NE3A Crystal structure of ricin toxin A chain complexed with a highly potent pterin-based small-molecular inhibitor 後藤 勝/Masaru GOTOU; Natsumi SAKAMOTO; 東 翔子/Shoko HIGASHI; Rena KAWATA; Kazuki NAGATSU; Ryota SAITO 英語 / English Journal of Enzyme Inhibition and Medicinal Chemistry 2023 38
11TGKB-M8G2 2020G633 5A/ 5A; NE3A/NE3A Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii 平戸 祐喜/Yuki HIRATO; 後藤 勝/Masaru GOTOU; 溝渕 太一 / Taichi Mizobuchi 英語 / English Acta Crystallographica Section F 2023 79 31
12D4PS-5R15 2020G524; 2020RP-23 NE3A; 1A/1A Substrate Recognition Mechanism of a Trichostatin A‐Forming Hydroxyamidotransferase 永田 隆平/Ryuhei NAGATA; 西山真; 葛山 智久/Tomohisa KUZUYAMA 英語 / English Biochemistry 2023 62 1833
13PEYB-5DW1 2019G017; 2019G018; 2020G021; 2020RP-04; 2021G052; 2022G034; 2023G052 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; 1A/1A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A; NE3A/NE3A Protocatechuate hydroxylase is a novel group A flavoprotein monooxygenase with a unique substrate recognition mechanism 福島 陸/Riku FUKUSHIMA; 山田 千早/Chihaya YAMADA; 荒川 孝俊/Takatoshi ARAKAWA; 伏信 進矢/Shinya FUSHINOBU 英語 / English Journal of Biological Chemistry 2023 300
14CKUH-Z69C 2015G020, 2014R-40, 2015R-36; 2016G083; 2016R-69; 2017G088; 2017G089; 2019G017; 2019G018; 2021G052; 2022G034; 2021PF-B026; 2022PF-B011; 2022PF-B014; 2023G052 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NW12A/NW12A; 1A/1A; 17A/17A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 15A2/15A2; 10C/10C; 10C/10C; NE3A/NE3A Identification and characterization of endo-α-, exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria ブランパン 騰真/Toma BLANPAIN; 伏信 進矢/Shinya FUSHINOBU; 荒川 孝俊/Takatoshi ARAKAWA; 中島 千穂/Chiho NAKASHIMA; 赤井 元気/Genki AKAI; 清水 伸隆 /Nobutaka SHIMIZU; 福島 陸/Riku FUKUSHIMA; 山田 千早/Chihaya YAMADA 英語 / English Nature Communications 2023 14
15922V-HKAW 2009G590; 2012G048; 2014G087; 2014R-40; 2015G020 5A/ 5A; 17A/17A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A Substrate recognition mode of a glycoside hydrolase family 42 β-galactosidase from Bifidobacterium longum subspecies infantis(BiBga42A) revealed by crystallographic and mutational analyses Aina GOTOH; 日高 將文/Masafumi HIDAKA; 伏信 進矢/Shinya FUSHINOBU; 片山 高嶺/Takane KATAYAMA 英語 / English Microbiome Research Reports 2023 2
164GJK-DDSP 2016G083; 2017G089; 2019G018; 2020RP-04 1A/1A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem Toshihiko KATO; 山田 千早/Chihaya YAMADA; ブランパン 騰真/Toma BLANPAIN; 伏信 進矢/Shinya FUSHINOBU; Takane KATAYAMA 英語 / English Nature Chemical Biology 2023 19 778
17VF29-11ZZ 2017G574; 2019G548; 2021G672 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A Mechanisms of Sugar Aminotransferase-like Enzymes to Synthesize Stereoisomers of Non-proteinogenic Amino Acids in Natural Product Biosynthesis 黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA 英語 / English ACS Chemical Biology 2023 18 385
1880MP-TFAX NE3A, 5A, 17A Structural basis of transcription regulation by CNC family transcription factor, Nrf2 Sengoku, Toru 英語 / English Nucleic Acids Research 2022 50 12543
19JHS4-GEAC 2018G036 5A, NE3A, NW12A Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis Ishida, Kohki 英語 / English Structure 2022 30 1637
201BUP-XHYB 2022G083、2020G114、2018G060、2017G595、2018G048、2019G535 1A, NE3A A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation Watari, Hiromi 英語 / English Nature Communications 2022 13
213HZU-TA6V 20191094, 20191134 NE3A Discovery of α-l-Glucosidase Raises the Possibility of α-l-Glucosides in Nature Shishiuchi, Rikako 英語 / English ACS Omega 2022 7 47411
229W93-YY9J 2016G648, 2018G618 NE3A Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout Nosaki, Shohei 英語 / English Nature Plants 2022 8 1440
238EZ2-4N49 2018G025, 2020G124 5A, NE3A Molecular action of larvicidal flavonoids on ecdysteroidogenic glutathione S-transferase Noppera-bo in Aedes aegypti Inaba, Kazue 英語 / English BMC Biology 2022 20
2448G1-UZH2 5A, NE3A Structural Analysis and Construction of a Thermostable Antifungal Chitinase Kozome, Dan 英語 / English Applied and Environmental Microbiology 2022 88
25KSRS-WE28 2011G598, 2015G024 NE3A Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor δ in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative Takuji Oyama 英語 / English Acta Crystallographica Section F 2022 78 81
26M00Z-2HYH NE3A, 17A, NW12A Structural insights reveal the second base catalyst of isomaltose glucohydrolase Takayoshi Tagami 英語 / English FEBS Journal 2022 289 1118
27MNE0-0PSE 2018G508; 2018G546; 2020G003 NE3A/NE3A; 6A/6A; 10C/10C Magnetic field effects on the structure and molecular behavior of pigeon iron?sulfur protein 新井 栄揮/Shigeki ARAI; 清水 瑠美 / Rumi Shimizu; 安達 基泰/Motoyasu ADACHI; 平井 光博/Mitsuhiro HIRAI 英語 / English Protein Science 2022 31
28W7MY-UDPS 2021G519; 2019G508; 2019G518; 2019G097 5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A Structural basis for proteolytic processing of Aspergillus sojae α-glucosidase L with strong transglucosylation activity 丁 一夫/Yifu DING; 大八木 彩子/Ayako OYAGI; 宮坂 祐希/Yuki MIYASAKA; 西河 淳/Atsushi NISHIKAWA; 殿塚 隆史/Takashi TONOZUKA 英語 / English Journal of Structural Biology 2022 214 1
29WJ0U-3XZP 2021G519; 2019G508; 2019G518; 2019G097 5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A Enzymatic and structural characterization of β-fructofuranosidase from the honeybee gut bacterium Frischella perrara 窪田 有紗/Arisa KUBOTA; 川合 礼華/Reika KAWAI; LI DING/DING LI; 殿塚 隆史/Takashi TONOZUKA 英語 / English Applied Microbiology and Biotechnology 2022 106 2455
305Z5B-JBVW 2017G167; 2019G027; 2021G031 5A/ 5A; NW12A/NW12A; NE3A/NE3A; 17A/17A Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase 中村 照也/Teruya NAKAMURA; 山縣 ゆり子/Yuriko YAMAGATA 英語 / English Proceedings of the National Academy of Sciences of the United States of America 2022 119
31YASM-4NF4 2016G566; 2015G652; 2018G520; 2020G633 5A/ 5A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; 5A/ 5A Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase Tatsuya Kubota; Erika Kurihara; Kazuya Watanabe; 緒方 康平/Kouhei OGATA; 金子 亮介/Ryousuke KANEKO; 後藤 勝/Masaru GOTOU; Toshihisa Ohshima; Kazuaki Yoshimune 英語 / English Communications Biology 2022 5 1
32B523-UPR7 2015G019; 2015G020; 2016R-69; 2017G089; 2019G018; 2021PF-B026 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 17A/17A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 15A2/15A2 Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria 山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU 英語 / English Bioscience Biotechnology and Biochemistry 2022 86 464
33P5GF-SBUH 2012G048; 2014G087; 2014R-40; 2015R-36; 2016G083; 2016R-69; 2019G017 17A/17A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 1A/1A; NE3A/NE3A; 1A/1A; 5A/ 5A; NW12A/NW12A; 1A/1A; 17A/17A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase 丸山 瞬/Shun MARUYAMA; 澤野 孝太/Kouta SAWANO; 味木 智子/Satoko AMAKI; 荒川 孝俊/Takatoshi ARAKAWA; 山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU 英語 / English Glycobiology 2022 32 171
34Z7FB-3T7D 2017G712 1A/1A; NE3A/NE3A; NW12A/NW12A Structural insights into apoptotic regulation of human Bfk as a novel Bcl-2 family member JANG DONGMAN/DONGMAN JANG; HAN Byung Woo/Byung Woo HAN; HAHN Hyung Gu/Hyung Gu HAHN; OH EUN KYUNG/EUN KYUNG OH; KIM HYOUN SOOK / HYOUN SOOK KIM 英語 / English Computational and Structural Biotechnology Journal 2022 20 745
35B86X-0Y67 2015G625 5A/ 5A; NE3A/NE3A; NW12A/NW12A The α- and β-Subunit Boundary at the Stem of the Mushroom-Like α3β3-Type Oxygenase Component of Rieske Non-Heme Iron Oxygenases Is the Rieske-Type Ferredoxin-Binding Site Pi-Cheng Tsai; Joydeep Chakraborty; 水口 千穂/Chiho MINAKUCHI; 野尻 秀昭/Hideaki NOJIRI 英語 / English Applied and Environmental Microbiology 2022 88
36UGD9-79K7 2017G574; 2019G548; 2021G672 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A Molecular Basis for Enzymatic Aziridine Formation via Sulfate Elimination 黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA 英語 / English Journal of the American Chemical Society 2022 144 16164
37T1EU-KVE3 2018G613, 2020G59 AR-NE3A (pdb# 6JKA)、AR-NW12A (pdb# 6JKB) Identification of the Inhibitory Compounds for Metallo-β-lactamases and Structural Analysis of the Binding Modes Taichi Kamo 英語 / English Chemical & Pharmaceutical Bulletin 2021 12 1179
38XWTS-VPUR 17A, 1A, 5A, NE3A, NW12A Structural basis for SdgB- and SdgA-mediated glycosylation of staphylococcal adhesive proteins Dong-Gyun Kim 英語 / English Acta Crystallographica Section D 2021 77 1460
392KSD-C4C3 2017G167 NE3A A Small Molecule, ACAi-028, with Anti-HIV-1 Activity Targets a Novel Hydrophobic Pocket on HIV-1 Capsid Travis Chia 英語 / English Antimicrobial Agents and Chemotherapy 2021 65
40X8RK-SEY8 NE3A Molecular recognition of a single-chain Fv antibody specific for GA-pyridine, an advanced glycation end-product (AGE), elucidated using biophysical techniques and synthetic antigen analogues Yoshihiro Kobashigawa 英語 / English Journal of Biochemistry 2021 0 1
41JXVN-W7TT 2017G022, 2019G007 NE3A Structural basis for substrate specificity of l-methionine decarboxylase Atsushi Okawa 英語 / English Protein Science 2021 30 663
427U7B-1PNT 2019G149 AR-NE3A Negative Cooperativity in Guest Binding of a Ditopic Self-Folding Biscavitand Fujimoto H. 英語 / English Organic Letters 2021 23 6217
43H9UC-8CBM NE3A Tetrasubstituted imidazoles as incognito Toll-like receptor 8 a(nta)gonists Yang Y. 英語 / English Nature Communications 2021 12
44PJEJ-2VFJ 2017G702 1A, NE3A Structure?function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis Kajiura H. 英語 / English Communications Biology 2021 4
45NPHS-6JV0 2017G512, 2019G513 1A, 17A, NE3A Crystal structure of a photosynthetic LH1-RC in complex with its electron donor HiPIP Kawakami T. 英語 / English Nature Communications 2021 12
462TGB-XNDH 2019G075, 2019G595 1A, 17A, NE3A Multiple structural states of Ca2+ regulated PET hydrolase, Cut190, and its correlation with activity and stability Akane Senga 英語 / English Journal of Biochemistry 2021 00 1
478NAJ-RXY6 2015G511; 2013G503 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol 横山 武司/Takeshi YOKOYAMA; 鈴木 亮哉; 水口峰之 英語 / English IUCrJ 2021 8 131
48NRMD-21N6 2018G538; 2020G580 5A/ 5A; NE3A/NE3A X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site 神鳥 成弘/Shigehiro KAMITORI 英語 / English Biochemical and Biophysical Research Communications 2021 554 138
49N9DG-UJYK 2016G082; 2018RP-44; 2020G681 NE3A/NE3A; 15A2/15A2; NE3A/NE3A Rosmarinic Acid and Sodium Citrate Have a Synergistic Bacteriostatic Effect against Vibrio Species by Inhibiting Iron Uptake 陸 鵬/Peng LU; 隋 苗苗/Miaomiao Sui; 張 迷敏/Mimin ZHANG; 王 夢瑶/Mengyao Wang; 神谷 岳洋/Takehiro KAMIYA; 岡本 研/Ken OKAMOTO; 伊藤 英晃/Hideaki ITOH; 奥田 傑/Suguru OKUDA; 鈴木 道生/Michio SUZUKI; 朝倉 富子/Tomiko ASAKURA; 藤原 徹/Toru FUJIWARA; 永田 宏次/Koji NAGATA 英語 / English International Journal of Molecular Sciences 2021 22
5090W4-JZN0 2016G648; 2018G618 NE3A/NE3A; NE3A/NE3A Highlighting the potential utility of MBP crystallization chaperone for Arabidopsis BIL1/BZR1 transcription factor-DNA complex 野﨑 翔平/Shohei NOSAKI; 田之倉 優/Masaru TANOKURA; 宮川 拓也/Takuya MIYAKAWA 英語 / English Scientific Reports 2021 11