| 1 | | 238S-NWRJ |
2020G533
|
5A/ 5A; NW12A/NW12A
|
Structural Insight into the Reaction Mechanism of Ketosynthase-Like Decarboxylase in a Loading Module of Modular Polyketide Synthases
|
千菅 太一/Taichi Chisuga; 宮永 顕正/Akimasa MIYANAGA
|
英語 / English
|
ACS Chemical Biology
|
2022
|
17
|
198
|
| 2 | | WJ0U-3XZP |
2021G519; 2019G508; 2019G518; 2019G097
|
5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Enzymatic and structural characterization of β-fructofuranosidase from the honeybee gut bacterium Frischella perrara
|
窪田 有紗/Arisa KUBOTA; 川合 礼華/Reika KAWAI; LI DING/DING LI; 殿塚 隆史/Takashi TONOZUKA
|
英語 / English
|
Applied Microbiology and Biotechnology
|
2022
|
106
|
2455
|
| 3 | | B86X-0Y67 |
2015G625
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A
|
The α- and β-Subunit Boundary at the Stem of the Mushroom-Like α3β3-Type Oxygenase Component of Rieske Non-Heme Iron Oxygenases Is the Rieske-Type Ferredoxin-Binding Site
|
Pi-Cheng Tsai; Joydeep Chakraborty; 水口 千穂/Chiho MINAKUCHI; 野尻 秀昭/Hideaki NOJIRI
|
英語 / English
|
Applied and Environmental Microbiology
|
2022
|
88
|
|
| 4 | | JU4G-8UBV |
2019G097; 2021G013
|
NW12A/NW12A; NW12A/NW12A
|
Structural and mechanistic insights into the substrate specificity and hydrolysis of GH31 α-N-acetylgalactosaminidase
|
宮崎 剛亜/Takatsugu MIYAZAKI; 池谷 真里奈/Marina IKEGAYA; Santiago Alonso-Gil
|
英語 / English
|
Biochimie
|
2022
|
195
|
90
|
| 5 | | 387R-H0CX |
2018G018; 2018G032
|
5A, NW12A; 15A2
|
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering
|
Takahide Yamaguchi
|
英語 / English
|
Biomolecules
|
2022
|
12
|
|
| 6 | | 6EFH-A437 |
2013G126; 2013G623
|
NW12A/NW12A; 5A/ 5A
|
Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery
|
沼本 修孝/Nobutaka NUMOTO
|
英語 / English
|
Biophysics and Physicobiology
|
2022
|
19
|
|
| 7 | | B523-UPR7 |
2015G019; 2015G020; 2016R-69; 2017G089; 2019G018; 2021PF-B026
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 17A/17A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 15A2/15A2
|
Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria
|
山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2022
|
86
|
464
|
| 8 | | RD8Z-159F |
2016G012, 2016G638, 2017G514, 2019G075, 2019G595
|
1A, 17A, NW12A
|
Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions
|
Toshifumi Fujioka
|
英語 / English
|
ChemBioChem
|
2022
|
23
|
|
| 9 | | F93J-31A7 |
2019G097; 2021G013
|
NW12A/NW12A; NW12A/NW12A
|
Unlocking the hydrolytic mechanism of GH92 α-1,2-mannosidases: computation inspires using C-glycosides as Michaelis complex mimics
|
Santiago Alonso-Gil; Kamil Parkan; Jakub Kaminsk?; Radek Pohl; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
Chemistry - A European Journal
|
2022
|
28
|
|
| 10 | | BXRB-147B |
2015G534; 2017G610; 2019G518; 2021G508; 2018G538; 2019G097; 2019G508; 2020G580; 2021G013; 2022G538
|
5A/ 5A; NW12A/NW12A; 5A/ 5A; 17A/17A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Microgravity environment grown crystal structure information based engineering of direct electron transfer type glucose dehydrogenase
|
吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Communications Biology
|
2022
|
5
|
|
| 11 | | YASM-4NF4 |
2016G566; 2015G652; 2018G520; 2020G633
|
5A/ 5A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; 5A/ 5A
|
Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase
|
Tatsuya Kubota; Erika Kurihara; Kazuya Watanabe; 緒方 康平/Kouhei OGATA; 金子 亮介/Ryousuke KANEKO; 後藤 勝/Masaru GOTOU; Toshihisa Ohshima; Kazuaki Yoshimune
|
英語 / English
|
Communications Biology
|
2022
|
5
|
1
|
| 12 | | Z7FB-3T7D |
2017G712
|
1A/1A; NE3A/NE3A; NW12A/NW12A
|
Structural insights into apoptotic regulation of human Bfk as a novel Bcl-2 family member
|
JANG DONGMAN/DONGMAN JANG; HAN Byung Woo/Byung Woo HAN; HAHN Hyung Gu/Hyung Gu HAHN; OH EUN KYUNG/EUN KYUNG OH; KIM HYOUN SOOK / HYOUN SOOK KIM
|
英語 / English
|
Computational and Structural Biotechnology Journal
|
2022
|
20
|
745
|
| 13 | | KR9C-9SAU |
2018S2-002, 2021G053
|
NW12A/NW12A
|
Crystalline-state chemiluminescence reactions of two-fluorophore-linked adamantylideneadamantane 1,2-dioxetane isomers accompanied by solid-to-solid phase transitions
|
松橋 千尋/Chihiro MATSUHASHI; 平野 誉/Takashi HIRANO
|
英語 / English
|
CrystEngComm
|
2022
|
24
|
3332
|
| 14 | | W4MB-5FF8 |
2012G544
|
NW12A/NW12A
|
Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis
|
SONG Hyun Kyu/Hyun Kyu SONG
|
英語 / English
|
EMBO Journal
|
2022
|
41
|
e109755
|
| 15 | | EH05-4SM6 |
2018G505; 2019RP-03; 2020RP-16; 2021PF-B001
|
5A/ 5A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A
|
Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms
|
中村 亮裕/Ryosuke NAKAMURA; 藤城 貴史/Takashi FUJISHIRO
|
英語 / English
|
FEBS Journal
|
2022
|
289
|
5947
|
| 16 | | M00Z-2HYH |
|
NE3A, 17A, NW12A
|
Structural insights reveal the second base catalyst of isomaltose glucohydrolase
|
Takayoshi Tagami
|
英語 / English
|
FEBS Journal
|
2022
|
289
|
1118
|
| 17 | | N9WZ-8AUX |
|
NW12A, 5A
|
Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions
|
Takeshi Hiromoto
|
英語 / English
|
Frontiers in Molecular Biosciences
|
2022
|
9
|
|
| 18 | | P5GF-SBUH |
2012G048; 2014G087; 2014R-40; 2015R-36; 2016G083; 2016R-69; 2019G017
|
17A/17A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 1A/1A; NE3A/NE3A; 1A/1A; 5A/ 5A; NW12A/NW12A; 1A/1A; 17A/17A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A
|
Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase
|
丸山 瞬/Shun MARUYAMA; 澤野 孝太/Kouta SAWANO; 味木 智子/Satoko AMAKI; 荒川 孝俊/Takatoshi ARAKAWA; 山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU
|
英語 / English
|
Glycobiology
|
2022
|
32
|
171
|
| 19 | | RANE-TAD6 |
2021G013
|
5A/ 5A; NW12A/NW12A
|
Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family
|
岡 希望/Nozomi OKA; 森 壮太; 池谷 真里奈/Marina IKEGAYA; 朴 龍洙; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
Glycobiology
|
2022
|
cwac058
|
|
| 20 | | VE9Y-U7N0 |
2016G619
|
5A, NW12A
|
Characterization and structural analyses of a novel glycosyltransferase acting on the β-1,2-glucosidic linkages
|
Kaito Kobayashi; Masahiro Nakajima
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
|
| 21 | | KBZP-52EZ |
2021G013
|
NW12A/NW12A; 5A/ 5A
|
Structural basis of the strict specificity of a bacterial GH31 α-1,3-glucosidase for nigerooligosaccharides
|
池谷 真里奈/Marina IKEGAYA; Toshio MORIYA; Naruhiko ADACHI; Masato KAWASAKI; Enoch Y. PARK; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
|
| 22 | | PFGD-PSCJ |
2020G590
|
17A, NW12A
|
Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity
|
Huiyan Lu
|
英語 / English
|
Journal of Chemical Information and Modeling
|
2022
|
62
|
6762
|
| 23 | | W7MY-UDPS |
2021G519; 2019G508; 2019G518; 2019G097
|
5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Structural basis for proteolytic processing of Aspergillus sojae α-glucosidase L with strong transglucosylation activity
|
丁 一夫/Yifu DING; 大八木 彩子/Ayako OYAGI; 宮坂 祐希/Yuki MIYASAKA; 西河 淳/Atsushi NISHIKAWA; 殿塚 隆史/Takashi TONOZUKA
|
英語 / English
|
Journal of Structural Biology
|
2022
|
214
|
1
|
| 24 | | UGD9-79K7 |
2017G574; 2019G548; 2021G672
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A
|
Molecular Basis for Enzymatic Aziridine Formation via Sulfate Elimination
|
黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA
|
英語 / English
|
Journal of the American Chemical Society
|
2022
|
144
|
16164
|
| 25 | | 373H-S0WP |
2017G053; 2019G101
|
NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome
|
Keisuke OKI; Mariko NAGATA; Yakeshi YAMAGAMI; Tomoyuki NUMATA; Sonoko ISHINO; 大山 拓次/Takuji OYAMA; Yoshizumi ISHINO
|
英語 / English
|
Nucleic Acids Research
|
2022
|
50
|
3601
|
| 26 | | KNMV-UA7D |
|
NW12A
|
Role of PemI in the Staphylococcus aureus PemIK toxin-antitoxin complex: PemI controls PemK by acting as a PemK loop mimic
|
Kim, Do-Hee
|
英語 / English
|
Nucleic Acids Research
|
2022
|
50
|
2319
|
| 27 | | 5Z5B-JBVW |
2017G167; 2019G027; 2021G031
|
5A/ 5A; NW12A/NW12A; NE3A/NE3A; 17A/17A
|
Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase
|
中村 照也/Teruya NAKAMURA; 山縣 ゆり子/Yuriko YAMAGATA
|
英語 / English
|
Proceedings of the National Academy of Sciences of the United States of America
|
2022
|
119
|
|
| 28 | | RM1B-MEKJ |
|
NW12A , 5A
|
Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH
|
Masayuki Oda
|
英語 / English
|
Protein Journal
|
2022
|
41
|
71
|
| 29 | | C3TZ-T56J |
2020G125
|
5A/ 5A; NW12A/NW12A
|
Molecular basis for thermal stability and affinity in a VHH: Contribution of the framework region and its influence in the conformation of the CDR3
|
中木戸 誠/Makoto NAKAKIDO; 津本 浩平/Kouhei TSUMOTO; MARTINEZ CAAVEIRO Jose Manuel/Jose Manuel MARTINEZ CAAVEIRO; 木下 清晶/Seisho KINOSHITA
|
英語 / English
|
Protein Science
|
2022
|
31
|
e4450
|
| 30 | | JHS4-GEAC |
2018G036
|
5A, NE3A, NW12A
|
Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis
|
Ishida, Kohki
|
英語 / English
|
Structure
|
2022
|
30
|
1637
|
| 31 | | MWVN-SMGE |
|
NW12A
|
Phosphosite-dependent presentation of dual phosphorylated peptides by MHC class I molecules
|
Yingze Zhao
|
英語 / English
|
iScience
|
2022
|
25
|
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