| 1 | | KYA0-W2X5 |
2016G516
|
5A
|
Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor
|
Murakawa T.
|
英語 / English
|
ACS Catalysis
|
2023
|
13
|
12403
|
| 2 | | VF29-11ZZ |
2017G574; 2019G548; 2021G672
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A
|
Mechanisms of Sugar Aminotransferase-like Enzymes to Synthesize Stereoisomers of Non-proteinogenic Amino Acids in Natural Product Biosynthesis
|
黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA
|
英語 / English
|
ACS Chemical Biology
|
2023
|
18
|
385
|
| 3 | | MZ6P-MY2A |
2020G533; 2022G506
|
5A/ 5A; 5A/ 5A
|
Structure-Based Analysis of Transient Interactions between Ketosynthase-like Decarboxylase and Acyl Carrier Protein in a Loading Module of Modular Polyketide Synthase
|
宮永 顕正/Akimasa MIYANAGA; 千菅 太一/Taichi Chisuga
|
英語 / English
|
ACS Chemical Biology
|
2023
|
18
|
1398
|
| 4 | | Z5JE-RNX0 |
2020G533
|
5A/ 5A; NW12A/NW12A
|
Structural Basis of Amide-Forming Adenylation Enzyme VinM in Vicenistatin Biosynthesis
|
宮永 顕正/Akimasa MIYANAGA; 千菅 太一/Taichi Chisuga
|
英語 / English
|
ACS Chemical Biology
|
2023
|
18
|
2343
|
| 5 | | YV44-VYW8 |
|
5A, 10C
|
Difference in the Inhibitory Effect of Thiol Compounds and Demetallation Rates from the Zn(II) Active Site of Metallo-β-lactamases (IMP-1 and IMP-6) Associated with a Single Amino Acid Substitution
|
Yamaguchi, Yoshihiro
|
英語 / English
|
ACS Infectious Diseases
|
2023
|
9
|
65
|
| 6 | | Z1HZ-BXU1 |
2016G102; 2022G009
|
5A/ 5A; 5A/ 5A
|
Ligand Screening System for the RXRα Heterodimer Using the Fluorescence RXR Agonist CU-6PMN
|
中野 祥吾/Shogo NAKANO
|
英語 / English
|
ACS Medicinal Chemistry Letters
|
2023
|
14
|
291
|
| 7 | | TGKB-M8G2 |
2020G633
|
5A/ 5A; NE3A/NE3A
|
Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii
|
平戸 祐喜/Yuki HIRATO; 後藤 勝/Masaru GOTOU; 溝渕 太一 / Taichi Mizobuchi
|
英語 / English
|
Acta Crystallographica Section F
|
2023
|
79
|
31
|
| 8 | | W9VX-0D40 |
|
5A , NW12A
|
Crystal structure of the C-terminal domain of the plant-specific microtubule-associated protein Spiral2
|
Marina Ohno
|
英語 / English
|
Acta Crystallographica Section F
|
2023
|
79
|
17
|
| 9 | | 4Z8R-W9JA |
2015G094, 2016G137
|
5A
|
Expression, purification and crystallization of N-acetyl-(R)-β-phenylalanine acylases derived from Burkholderia sp. AJ110349 and Variovorax sp. AJ110348 and structure determination of the Burkholderia enzyme
|
Kato, Yuki
|
英語 / English
|
Acta Crystallographica Section F
|
2023
|
79
|
70
|
| 10 | | HT75-0MFK |
2019G518; 2021G508; 2023G617; 2021G013; 2019G508; 2020G580
|
5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Direct relationship between dimeric form and activity in the acidic copper-zinc superoxide dismutase from lemon
|
吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Acta Crystallographica Section F
|
2023
|
79
|
301
|
| 11 | | 2Z09-Z917 |
2019RP-02; 2020RP-19; 2021PF-B007; 2022PF-B004
|
17A/17A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; 17A/17A
|
Functional and Structural Insights into the Human PPARα/δ/γ Targeting Preferences of Anti-NASH Investigational Drugs, Lanifibranor, Seladelpar, and Elafibranor
|
鎌田 祥太郎/Shotaro KAMATA; Takuji OYAMA
|
英語 / English
|
Antioxidants
|
2023
|
12
|
|
| 12 | | 3AVD-WGJW |
2016G013; 2016G532; 2017G051; 2017G513; 2017G610; 2018G538; 2019G097; 2019G508; 2019G518; 2020G580; 2021G013; 2021G508; 2022G538
|
5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 17A/17A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer
|
吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Applied Biochemistry and Biotechnology
|
2023
|
195
|
4537
|
| 13 | | D0RN-4VXC |
2016G532; 2017G610; 2018G538; 2019G508; 2019G518; 2020G580; 2021G508
|
5A/ 5A; 5A/ 5A; 17A/17A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose
|
神鳥 成弘/Shigehiro KAMITORI; 吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Applied Microbiology and Biotechnology
|
2023
|
107
|
233
|
| 14 | | KNCM-26CA |
2022G588
|
5A/ 5A
|
Synthesis of triazolo[c]coumarins and differences in the fluorescence properties of their isomers. / Synthesis of triazolo[c]coumarins and differences in the fluorescence properties of their isomers.
|
石田 寛明/Hiroaki ISHIDA
|
英語 / English
|
Asian Journal of Organic Chemistry
|
2023
|
12
|
e202300013
|
| 15 | | V5SC-78GG |
2022G538; 2020G580
|
NE3A/NE3A; 5A/ 5A
|
X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose
|
神鳥 成弘/Shigehiro KAMITORI
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2023
|
682
|
187
|
| 16 | | YR2E-S394 |
2018G507; 2020G533
|
5A/ 5A; 5A/ 5A
|
Structural Basis of Transient Interactions of Acyltransferase VinK with the Loading Acyl Carrier Protein of the Vicenistatin Modular Polyketide Synthase
|
宮永 顕正/Akimasa MIYANAGA; 千菅 太一/Taichi Chisuga; 工藤 史貴/Fumitaka KUDO
|
英語 / English
|
Biochemistry
|
2023
|
62
|
17
|
| 17 | | 6G13-31XM |
2021G143
|
5A/ 5A
|
Two different alanine dehydrogenases from Geobacillus kaustophilus: their biochemical characteristics and differential expression in vegetative cells and spores
|
Miku Maeno
|
英語 / English
|
Biochimica et Biophysica Acta-Proteins and Proteomics
|
2023
|
1871
|
140904
|
| 18 | | VCKV-VFKG |
2018G658; 2018RP-21; 2019RP-02; 2020RP-19; 2021PF-B007; 2022PF-B004; 2022G663
|
5A/ 5A; NE3A/NE3A; 17A/17A; 17A/17A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; 17A/17A; 5A/ 5A; NW12A/NW12A
|
Current Clinical Trial Status and Future Prospects of PPAR-Targeted Drugs for Treating Nonalcoholic Fatty Liver Disease
|
鎌田 祥太郎/Shotaro KAMATA
|
英語 / English
|
Biomolecules
|
2023
|
13
|
|
| 19 | | 1E9P-W55G |
|
5A
|
Description of peptide bond planarity from high-resolution neutron crystallography
|
Yuya Hanazono
|
英語 / English
|
Biophysics and Physicobiology
|
2023
|
20
|
|
| 20 | | 5MMB-VSXR |
2021G519; 2019G508; 2017G513
|
5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 17A/17A
|
Characterization and alteration of product specificity of Beijerinckia indica subsp. indica β-fructosyltransferase
|
LI DING/DING LI; 宮坂 祐希/Yuki MIYASAKA; 窪田 有紗/Arisa KUBOTA; 西河 淳/Atsushi NISHIKAWA; 殿塚 隆史/Takashi TONOZUKA
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2023
|
87
|
981
|
| 21 | | 09BF-S2T4 |
2017G033
|
5A
|
New insights into the oxidation process from neutron and X-ray crystal structures of an O2-sensitive [NiFe]-hydrogenase
|
Hiromoto, Takeshi
|
英語 / English
|
Chemical Science
|
2023
|
14
|
9306
|
| 22 | | VHPA-MX5A |
2021G046
|
5A
|
Synthesis, Structures, and Complexation with Phenolic Guests of Acridone-Incorporated Arylene?Ethynylene Macrocyclic Compounds
|
Komori, Takashi
|
英語 / English
|
Chemistry - An Asian Journal
|
2023
|
18
|
|
| 23 | | J40H-NVX1 |
2021G046
|
5A
|
Controlling the Assembly of PdII/Bianthryl-Based Monomeric and Dimeric Interlocked Cages by Steric Effects
|
Sota Watanabe
|
英語 / English
|
ChemistryEurope
|
2023
|
1
|
|
| 24 | | KNSG-XW79 |
2020G527; 2022G523
|
5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Identification of enzymatic functions of osmo-regulated periplasmic glucan biosynthesis proteins from Escherichia coli reveals a novel glycoside hydrolase family
|
元内 省/Sei MOTOUCHI; 中島 将博/Masahiro NAKAJIMA
|
英語 / English
|
Communications Biology
|
2023
|
6
|
|
| 25 | | CEBY-WJ1E |
2022G009
|
5A/ 5A
|
Structural and functional analysis of hyper-thermostable ancestral L-amino acid oxidase that can convert Trp derivatives to D-forms by chemoenzymatic reaction
|
中野 祥吾/Shogo NAKANO
|
英語 / English
|
Communications Chemistry
|
2023
|
6
|
|
| 26 | | S1HJ-VK3T |
|
5A
|
Development of a novel single-chain L-glutamate oxidase from Streptomyces sp. X-119?6 by inserting flexible linkers
|
Yamaguchi, Hiroki
|
英語 / English
|
Enzyme and Microbial Technology
|
2023
|
170
|
|
| 27 | | GAFS-XYZU |
2020G533
|
5A/ 5A
|
Biochemical and crystallographic assessments of the effect of 4,6-O-disulfated disaccharide moieties in chondroitin sulfate E on chondroitinase ABC I activity
|
宮永 顕正/Akimasa MIYANAGA
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
2379
|
| 28 | | 68VM-YZYA |
2021G013; 2023G026
|
5A/ 5A; 5A/ 5A
|
Structure?function analysis of bacterial GH31 α-galactosidases specific for α-(1→4)-galactobiose
|
池谷 真里奈/Marina IKEGAYA; Enoch Y. Park; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
4984
|
| 29 | | GUP2-RB0Y |
2017G167; 2019G027; 2021G031
|
5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; 17A/17A
|
Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition
|
中村 照也/Teruya NAKAMURA; 山縣 ゆり子/Yuriko YAMAGATA
|
英語 / English
|
FEBS Letters
|
2023
|
597
|
1770
|
| 30 | | 4ZSB-TBDM |
2022G538
|
5A/ 5A
|
Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains
|
神鳥 成弘/Shigehiro KAMITORI
|
英語 / English
|
FEBS Letters
|
2023
|
597
|
1345
|
| 31 | | ANKC-F8NY |
2015G511; 2017G006
|
5A/ 5A; 5A/ 5A
|
Structural and mutational analyses of decarboxylated osteocalcin provide insight into its adiponectin-inducing activity
|
Mineyuki Mizuguchi
|
英語 / English
|
FEBS Letters
|
2023
|
597
|
1479
|
| 32 | | G27U-YAPK |
2022G643
|
5A
|
Single-Crystal Structures of Benzenehexathiol and Its Disulfide Forms
|
Chiba Y.
|
英語 / English
|
Inorganic Chemistry
|
2023
|
62
|
|
| 33 | | E3P5-G186 |
2022G502
|
5A
|
First crystal structure of an NADP+-dependent l-arginine dehydrogenase belonging to the μ-crystallin family
|
米田 一成/Kazunari YONEDA; Ryushi Kawakami
|
英語 / English
|
International Journal of Biological Macromolecules
|
2023
|
249
|
1
|
| 34 | | BFEW-DAGJ |
2021G058
|
5A/ 5A
|
Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile
|
菱木 麻美/Asami HISHIKI; 岡﨑 菫 / Sumire Okazaki; 原 幸大 / Kodai Hara; 橋本 博 / Hiroshi Hashimoto
|
英語 / English
|
Journal of Biochemistry
|
2023
|
173
|
13
|
| 35 | | RS6V-29PJ |
2017G142; 2019G080
|
5A/ 5A; 17A/17A
|
Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum
|
生城浩子/Hiroko Ikushiro; 村上大毅; 宮原 郁子/Ikuko MIYAHARA; 神谷 信夫/Nobuo Kamiya; 矢野 貴人/Takato Yano
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
|
| 36 | | 6JWT-3FSJ |
2021G013
|
5A/ 5A
|
Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria
|
中村 駿太郎/Shuntaro NAKAMURA; 倉田 陸矢/Rikuya KURATA; 殿塚隆史; 舟根和美; 朴龍洙; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
|
| 37 | | YU07-CDN4 |
2021G582
|
5A
|
An ependymin-related blue carotenoprotein decorates marine blue sponge
|
Kawasaki S.
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
|
| 38 | | GEZ3-VV07 |
2022G098
|
5A/ 5A
|
Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth
|
中木戸 誠/Makoto NAKAKIDO; 津本 浩平/Kouhei TSUMOTO; 長門石 曉/Satoru NAGATOISHI; MARTINEZ CAAVEIRO Jose Manuel/Jose Manuel MARTINEZ CAAVEIRO; VALENCIANO Bellido Sandra/Sandora Beriido Barenshiano
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
104927
|
| 39 | | S34V-MM8C |
2022G098
|
5A/ 5A
|
Anti-InlA single-domain antibodies that inhibit the cell invasion of Listeria monocytogenes
|
津本 浩平/Kouhei TSUMOTO; 長門石 曉/Satoru NAGATOISHI; 中木戸 誠/Makoto NAKAKIDO; MARTINEZ CAAVEIRO Jose Manuel/Jose Manuel MARTINEZ CAAVEIRO
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
105254
|
| 40 | | B8EC-VSPW |
2018G520; 2022G603
|
5A/ 5A; NE3A/NE3A
|
Crystal structure of ricin toxin A chain complexed with a highly potent pterin-based small-molecular inhibitor
|
後藤 勝/Masaru GOTOU; Natsumi SAKAMOTO; 東 翔子/Shoko HIGASHI; Rena KAWATA; Kazuki NAGATSU; Ryota SAITO
|
英語 / English
|
Journal of Enzyme Inhibition and Medicinal Chemistry
|
2023
|
38
|
|
| 41 | | Y4SG-DKT2 |
2017G651
|
5A/ 5A; 17A/17A
|
Specific binding of Hg2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA
|
近藤 次郎/Jiro KONDO; 鳥越秀峰
|
英語 / English
|
Journal of Inorganic Biochemistry
|
2023
|
241
|
112125
|
| 42 | | AP48-TF68 |
2020P003
|
5A/ 5A
|
Coordination and photoisomerizaiton of Azobenzene-amino acid Schiff base Cu(II) complexes to lysozyme
|
Yuto Kuroda; 秋津 貴城/Takashiro AKITSU
|
英語 / English
|
Journal of Materials Science and Chemical Engineering
|
2023
|
11
|
34
|
| 43 | | WFCD-AH1F |
2015G717, 2022G588; 2013G656
|
5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Covalent Modifier Discovery Using Hydrogen/Deuterium Exchange?Mass Spectrometry
|
小島 拓之/Hiroyuki KOJIMA; 柳 諒太 / Ryota Yanagi; 樋口愛理 / Eri Higuchi; 吉澤 麻美/Mami YOSHIZAWA; 下平 智之/ Tomoyuki Shimodaira; 熊谷 美咲 / Misaki Kumagai; 京谷 竜宏 / Tatsuhiro Kyoya; 関根 美夢 / Miyu Sekine; 江川 大地/Daichi EGAWA; 大橋 南美/Nami OHASHI; 石田 寛明/Hiroaki ISHIDA; 山本 恵子 / Keiko Yamamoto; 伊藤 俊将/Toshimasa ITOH
|
英語 / English
|
Journal of Medicinal Chemistry
|
2023
|
66
|
4827
|
| 44 | | 4BFT-PKB2 |
|
5A
|
X-Ray Conformation and Structure?Activity Relationships of MA026, a Reversible Tight Junction Opener
|
Mukaiyama, Minagi
|
英語 / English
|
Journal of Medicinal Chemistry
|
2023
|
66
|
8717
|
| 45 | | RT6H-NWXN |
2021G053; 2022G592
|
5A/ 5A; NW12A/NW12A; NW12A/NW12A
|
A Steric-Repulsion-Driven Clutch Stack of Triaryltriazines: Correlated Molecular Rotations and a Thermoresponsive Gearshift in the Crystalline Solid
|
陳 旻究/Mingoo JIN; 佐藤 文菜/Ayana SATO; 半妙 夏海/Natsumi HAMMYO
|
英語 / English
|
Journal of the American Chemical Society
|
2023
|
145
|
27512
|
| 46 | | 922V-HKAW |
2009G590; 2012G048; 2014G087; 2014R-40; 2015G020
|
5A/ 5A; 17A/17A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A
|
Substrate recognition mode of a glycoside hydrolase family 42 β-galactosidase from Bifidobacterium longum subspecies infantis(BiBga42A) revealed by crystallographic and mutational analyses
|
Aina GOTOH; 日高 將文/Masafumi HIDAKA; 伏信 進矢/Shinya FUSHINOBU; 片山 高嶺/Takane KATAYAMA
|
英語 / English
|
Microbiome Research Reports
|
2023
|
2
|
|
| 47 | | 4GJK-DDSP |
2016G083; 2017G089; 2019G018; 2020RP-04
|
1A/1A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A
|
A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem
|
Toshihiko KATO; 山田 千早/Chihaya YAMADA; ブランパン 騰真/Toma BLANPAIN; 伏信 進矢/Shinya FUSHINOBU; Takane KATAYAMA
|
英語 / English
|
Nature Chemical Biology
|
2023
|
19
|
778
|
| 48 | | RXZH-D5G5 |
2018G505; 2020G514; 2019RP-03; 2020RP-16
|
17A/17A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A; 17A/17A; NW12A/NW12A
|
Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases
|
藤城 貴史/Takashi FUJISHIRO; 高岡 恭世/Kyosei TAKAOKA
|
英語 / English
|
Nature Communications
|
2023
|
14
|
|
| 49 | | CKUH-Z69C |
2015G020, 2014R-40, 2015R-36; 2016G083; 2016R-69; 2017G088; 2017G089; 2019G017; 2019G018; 2021G052; 2022G034; 2021PF-B026; 2022PF-B011; 2022PF-B014; 2023G052
|
17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NW12A/NW12A; 1A/1A; 17A/17A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 15A2/15A2; 10C/10C; 10C/10C; NE3A/NE3A
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Identification and characterization of endo-α-, exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria
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ブランパン 騰真/Toma BLANPAIN; 伏信 進矢/Shinya FUSHINOBU; 荒川 孝俊/Takatoshi ARAKAWA; 中島 千穂/Chiho NAKASHIMA; 赤井 元気/Genki AKAI; 清水 伸隆 /Nobutaka SHIMIZU; 福島 陸/Riku FUKUSHIMA; 山田 千早/Chihaya YAMADA
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英語 / English
|
Nature Communications
|
2023
|
14
|
|
| 50 | | RSKG-8F7V |
2017G655
|
17A; 5A
|
An archaeal transcription factor EnfR with a novel ‘eighth note’ fold controls hydrogen production of a hyperthermophilic archaeon Thermococcus onnurineus NA1
|
Da-Woon Bae; Sun-Shin Cha
|
英語 / English
|
Nucleic Acids Research
|
2023
|
51
|
10026
|
