| 1 | | 238S-NWRJ |
2020G533
|
5A/ 5A; NW12A/NW12A
|
Structural Insight into the Reaction Mechanism of Ketosynthase-Like Decarboxylase in a Loading Module of Modular Polyketide Synthases
|
千菅 太一/Taichi Chisuga; 宮永 顕正/Akimasa MIYANAGA
|
英語 / English
|
ACS Chemical Biology
|
2022
|
17
|
198
|
| 2 | | SNAT-3Y85 |
2022G588; 2020G618
|
5A/ 5A; 5A/ 5A
|
Oligoarginine-conjugated peptide foldamers inhibiting vitamin D receptor-mediated transcription / Oligoarginine-conjugated peptide foldamers inhibiting vitamin D receptor-mediated transcription
|
石田 寛明/Hiroaki ISHIDA
|
英語 / English
|
ACS Omega
|
2022
|
7
|
46573
|
| 3 | | FY9G-C552 |
2018G006; 2020G007; 2022G009
|
5A/ 5A; 5A/ 5A; 5A/ 5A
|
Reaction Mechanism of Ancestral l-Lys alpha-Oxidase from Caulobacter Species Studied by Biochemical, Structural, and Computational Analysis
|
本山 智晴/Tomoharu MOTOYAMA; 中野 祥吾/Shogo NAKANO
|
英語 / English
|
ACS Omega
|
2022
|
7
|
44407
|
| 4 | | 08YA-M7BH |
2019G657; 2021G673
|
5A/ 5A; 5A/ 5A
|
Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography
|
茶竹 俊行 / Toshiyuki CHATAKE; 田中 伊知朗/Ichiro TANAKA
|
英語 / English
|
Acta Crystallographica Section D
|
2022
|
78
|
770
|
| 5 | | S95Z-DVKY |
2017G651
|
5A/ 5A
|
A Novel AgI-DNA Rod Comprising a One-Dimensional Array of 11 Silver Ions within a Double Helical Structure
|
Takahiro Atsugi; Akira Ono; Miho Tasaki; Eguchi Natsumi; Shoji Fujiwara; 近藤 次郎/Jiro KONDO
|
英語 / English
|
Angewandte Chemie-International Edition
|
2022
|
61
|
|
| 6 | | WJ0U-3XZP |
2021G519; 2019G508; 2019G518; 2019G097
|
5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Enzymatic and structural characterization of β-fructofuranosidase from the honeybee gut bacterium Frischella perrara
|
窪田 有紗/Arisa KUBOTA; 川合 礼華/Reika KAWAI; LI DING/DING LI; 殿塚 隆史/Takashi TONOZUKA
|
英語 / English
|
Applied Microbiology and Biotechnology
|
2022
|
106
|
2455
|
| 7 | | B86X-0Y67 |
2015G625
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A
|
The α- and β-Subunit Boundary at the Stem of the Mushroom-Like α3β3-Type Oxygenase Component of Rieske Non-Heme Iron Oxygenases Is the Rieske-Type Ferredoxin-Binding Site
|
Pi-Cheng Tsai; Joydeep Chakraborty; 水口 千穂/Chiho MINAKUCHI; 野尻 秀昭/Hideaki NOJIRI
|
英語 / English
|
Applied and Environmental Microbiology
|
2022
|
88
|
|
| 8 | | 48G1-UZH2 |
|
5A, NE3A
|
Structural Analysis and Construction of a Thermostable Antifungal Chitinase
|
Kozome, Dan
|
英語 / English
|
Applied and Environmental Microbiology
|
2022
|
88
|
|
| 9 | | 8EZ2-4N49 |
2018G025, 2020G124
|
5A, NE3A
|
Molecular action of larvicidal flavonoids on ecdysteroidogenic glutathione S-transferase Noppera-bo in Aedes aegypti
|
Inaba, Kazue
|
英語 / English
|
BMC Biology
|
2022
|
20
|
|
| 10 | | 6HWD-56AA |
|
5A
|
Crystal structure of the chromosome partition protein MukE homodimer
|
Qian, Jia-Wei
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2022
|
586
|
229
|
| 11 | | BNYD-HB9M |
|
5A
|
Structural insights into the substrate specificity of 5-chloro-2-hydroxymuconate tautomerase CnbG
|
Hong-Lin Ma
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2022
|
620
|
42
|
| 12 | | 387R-H0CX |
2018G018; 2018G032
|
5A, NW12A; 15A2
|
Open-Bundle Structure as the Unfolding Intermediate of Cytochrome c′ Revealed by Small Angle Neutron Scattering
|
Takahide Yamaguchi
|
英語 / English
|
Biomolecules
|
2022
|
12
|
|
| 13 | | 86MW-HGWV |
2019G564
|
5A/ 5A
|
Arylalkynyl amide-type peroxisome proliferator-activated receptor γ (PPARγ)-selective antagonists covalently bind to the PPARγ ligand binding domain with a unique binding mode
|
吉澤 麻美/Mami YOSHIZAWA; 青山友美/Tomomi AOYAMA; 伊藤 俊将/Toshimasa ITOH; 宮地 弘幸/Hiroyuki Miyachi
|
英語 / English
|
Bioorganic & Medicinal Chemistry Letters
|
2022
|
64
|
128676
|
| 14 | | 6EFH-A437 |
2013G126; 2013G623
|
NW12A/NW12A; 5A/ 5A
|
Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery
|
沼本 修孝/Nobutaka NUMOTO
|
英語 / English
|
Biophysics and Physicobiology
|
2022
|
19
|
|
| 15 | | B523-UPR7 |
2015G019; 2015G020; 2016R-69; 2017G089; 2019G018; 2021PF-B026
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 17A/17A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 15A2/15A2
|
Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria
|
山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2022
|
86
|
464
|
| 16 | | FM14-5JB5 |
2017G149
|
5A/ 5A; 17A/17A
|
Development of a DNA aptamer that binds to the complementarity-determining region of therapeutic monoclonal antibody and affinity improvement induced by pH-change for sensitive detection
|
Taro Saito; Yutaka Shimizu; Kaori Tsukakoshi; Koichi Abe; Jinhee Lee; Kinuko Ueno; Ryutaro Asano; Brian V Jones; Tomohiro Yamada; Tatsuki Nakano; Jiaxing Tong; Asami Hishiki; Kodai Hara; Hiroshi Hashimoto; Koji Sode; Toshimasa Toyo'oka; Kenichiro Todoroki; Kazunori Ikebukuro
|
英語 / English
|
Biosensors and Bioelectronics
|
2022
|
203
|
|
| 17 | | 24BG-A91P |
2021G046
|
5A/ 5A
|
Synthesis of 1H-2-Benzopyran-5,8-dione Skeleton through a Cascade Reaction between Benzoquinone and β-Ketoester
|
大津 博義/Hiroyoshi OHTSU; 河野 正規/Masaki KAWANO
|
英語 / English
|
Chemistry Letters
|
2022
|
51
|
356
|
| 18 | | BXRB-147B |
2015G534; 2017G610; 2019G518; 2021G508; 2018G538; 2019G097; 2019G508; 2020G580; 2021G013; 2022G538
|
5A/ 5A; NW12A/NW12A; 5A/ 5A; 17A/17A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Microgravity environment grown crystal structure information based engineering of direct electron transfer type glucose dehydrogenase
|
吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Communications Biology
|
2022
|
5
|
|
| 19 | | YASM-4NF4 |
2016G566; 2015G652; 2018G520; 2020G633
|
5A/ 5A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; 5A/ 5A
|
Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase
|
Tatsuya Kubota; Erika Kurihara; Kazuya Watanabe; 緒方 康平/Kouhei OGATA; 金子 亮介/Ryousuke KANEKO; 後藤 勝/Masaru GOTOU; Toshihisa Ohshima; Kazuaki Yoshimune
|
英語 / English
|
Communications Biology
|
2022
|
5
|
1
|
| 20 | | J3GJ-2VWH |
2018G143
|
5A
|
A neuropathy-associated kinesin KIF1A mutation hyper-stabilizes the motor-neck interaction during the ATPase cycle
|
Morikawa M.
|
英語 / English
|
EMBO Journal
|
2022
|
41
|
|
| 21 | | EH05-4SM6 |
2018G505; 2019RP-03; 2020RP-16; 2021PF-B001
|
5A/ 5A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A
|
Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms
|
中村 亮裕/Ryosuke NAKAMURA; 藤城 貴史/Takashi FUJISHIRO
|
英語 / English
|
FEBS Journal
|
2022
|
289
|
5947
|
| 22 | | N9WZ-8AUX |
|
NW12A, 5A
|
Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions
|
Takeshi Hiromoto
|
英語 / English
|
Frontiers in Molecular Biosciences
|
2022
|
9
|
|
| 23 | | P5GF-SBUH |
2012G048; 2014G087; 2014R-40; 2015R-36; 2016G083; 2016R-69; 2019G017
|
17A/17A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 1A/1A; NE3A/NE3A; 1A/1A; 5A/ 5A; NW12A/NW12A; 1A/1A; 17A/17A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A
|
Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase
|
丸山 瞬/Shun MARUYAMA; 澤野 孝太/Kouta SAWANO; 味木 智子/Satoko AMAKI; 荒川 孝俊/Takatoshi ARAKAWA; 山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU
|
英語 / English
|
Glycobiology
|
2022
|
32
|
171
|
| 24 | | Z8MA-SFEE |
2018G538
|
5A/ 5A
|
Crystal structure and conformational stability of a galectin-1 tandem-repeat mutant with a short linker
|
野中 康宏/Yasuhiro NONAKA; 神鳥 成弘/Shigehiro KAMITORI
|
英語 / English
|
Glycobiology
|
2022
|
32
|
251
|
| 25 | | RANE-TAD6 |
2021G013
|
5A/ 5A; NW12A/NW12A
|
Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family
|
岡 希望/Nozomi OKA; 森 壮太; 池谷 真里奈/Marina IKEGAYA; 朴 龍洙; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
Glycobiology
|
2022
|
cwac058
|
|
| 26 | | P4Y1-B889 |
2017G501
|
17A/17A; 5A/ 5A
|
Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP
|
横山 武司/Takeshi YOKOYAMA
|
英語 / English
|
IUCrJ
|
2022
|
9
|
562
|
| 27 | | D8K1-JVGW |
2016G516
|
5A
|
Re-evaluation of protein neutron crystallography with and without X-ray/neutron joint refinement
|
Takeshi Murakawa
|
英語 / English
|
IUCrJ
|
2022
|
9
|
342
|
| 28 | | N1BN-UMAU |
2021G143
|
5A/ 5A
|
Crystal structure of a novel type of ornithine δ-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii
|
Ryushi KAWAKAMI; Tatsuya OHSHIDA; 林 順司/Junji HAYASHI; Kazunari YONEDA; Toshio FURUMOTO; Toshihisa OHSHIMA; 櫻庭 春彦/Haruhiko SAKURABA
|
英語 / English
|
International Journal of Biological Macromolecules
|
2022
|
208
|
731
|
| 29 | | EHUG-42YY |
2020RP-19; 2021PF-B007
|
5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A
|
Functional and Structural Insights into Human PPARα/δ/γ Subtype Selectivity of Bezafibrate, Fenofibric Acid, and Pemafibrate
|
鎌田 祥太郎/Shotaro KAMATA; 大山 拓次 / Takuji OYAMA
|
英語 / English
|
International Journal of Molecular Sciences
|
2022
|
23
|
|
| 30 | | SH37-B4K9 |
|
5A
|
Surface Engineering of Top7 to Facilitate Structure Determination
|
Yuki Ito
|
英語 / English
|
International Journal of Molecular Sciences
|
2022
|
23
|
|
| 31 | | VE9Y-U7N0 |
2016G619
|
5A, NW12A
|
Characterization and structural analyses of a novel glycosyltransferase acting on the β-1,2-glucosidic linkages
|
Kaito Kobayashi; Masahiro Nakajima
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
|
| 32 | | YJHF-CZA0 |
2019G578
|
5A/ 5A
|
Comparison of glycoside hydrolase family 3 β-xylosidases from basidiomycetes and ascomycetes reveals evolutionarily distinct xylan degradation systems
|
小島 圭輔/Keisuke KOJIMA; 砂川 直輝/Naoki SUNAGAWA; 五十嵐 圭日子/Kiyohiko IGARASHI
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
101670
|
| 33 | | EBXT-AHBG |
2020G125
|
5A/ 5A
|
Antibody recognition of complement factor H reveals a flexible loop involved in atypical hemolytic uremic syndrome pathogenesis
|
横尾 尚典/Takanori YOKOO; 中木戸 誠/Makoto NAKAKIDO; 津本 浩平/Kouhei TSUMOTO; MARTINEZ CAAVEIRO Jose Manuel/Jose Manuel MARTINEZ CAAVEIRO; 田部 亜季/Aki TANABE
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
101962
|
| 34 | | G7TX-XU2K |
2020G125
|
5A/ 5A
|
Structure and role of the linker domain of the iron surface-determinant protein IsdH in heme transportation in Staphylococcus aureus
|
中木戸 誠/Makoto NAKAKIDO; 津本 浩平/Kouhei TSUMOTO; MARTINEZ CAAVEIRO Jose Manuel/Jose Manuel MARTINEZ CAAVEIRO; VALENCIANO Bellido Sandra/Sandora Beriido Barenshiano; 長門石 曉/Satoru NAGATOISHI
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
101995
|
| 35 | | KBZP-52EZ |
2021G013
|
NW12A/NW12A; 5A/ 5A
|
Structural basis of the strict specificity of a bacterial GH31 α-1,3-glucosidase for nigerooligosaccharides
|
池谷 真里奈/Marina IKEGAYA; Toshio MORIYA; Naruhiko ADACHI; Masato KAWASAKI; Enoch Y. PARK; 宮崎 剛亜/Takatsugu MIYAZAKI
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
|
| 36 | | VKZ6-YZBH |
|
5A
|
Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex
|
Daijun Zheng
|
英語 / English
|
Journal of Biological Chemistry
|
2022
|
298
|
|
| 37 | | 2VD2-G0JA |
|
5A
|
Discovery of Chlorofluoroacetamide-Based Covalent Inhibitors for Severe Acute Respiratory Syndrome Coronavirus 2 3CL Protease
|
Yuya Hirose
|
英語 / English
|
Journal of Medicinal Chemistry
|
2022
|
65
|
13852
|
| 38 | | 0JBR-1H6X |
2020G651
|
5A/ 5A
|
Structural study of a cyclopentane sorption complex of fully dehydrated H-ZSM-5 (Si/Al = 24), |H3.8(C5H10)1.47|[Al3.8Si92.2O192]-MFI
|
HEO Nam Ho/Nam Ho HEO
|
英語 / English
|
Journal of Porous Materials
|
2022
|
29
|
73
|
| 39 | | W7MY-UDPS |
2021G519; 2019G508; 2019G518; 2019G097
|
5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Structural basis for proteolytic processing of Aspergillus sojae α-glucosidase L with strong transglucosylation activity
|
丁 一夫/Yifu DING; 大八木 彩子/Ayako OYAGI; 宮坂 祐希/Yuki MIYASAKA; 西河 淳/Atsushi NISHIKAWA; 殿塚 隆史/Takashi TONOZUKA
|
英語 / English
|
Journal of Structural Biology
|
2022
|
214
|
1
|
| 40 | | UGD9-79K7 |
2017G574; 2019G548; 2021G672
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A
|
Molecular Basis for Enzymatic Aziridine Formation via Sulfate Elimination
|
黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA
|
英語 / English
|
Journal of the American Chemical Society
|
2022
|
144
|
16164
|
| 41 | | 373H-S0WP |
2017G053; 2019G101
|
NW12A/NW12A; 5A/ 5A; NW12A/NW12A
|
Family D DNA polymerase interacts with GINS to promote CMG-helicase in the archaeal replisome
|
Keisuke OKI; Mariko NAGATA; Yakeshi YAMAGAMI; Tomoyuki NUMATA; Sonoko ISHINO; 大山 拓次/Takuji OYAMA; Yoshizumi ISHINO
|
英語 / English
|
Nucleic Acids Research
|
2022
|
50
|
3601
|
| 42 | | 80MP-TFAX |
|
NE3A, 5A, 17A
|
Structural basis of transcription regulation by CNC family transcription factor, Nrf2
|
Sengoku, Toru
|
英語 / English
|
Nucleic Acids Research
|
2022
|
50
|
12543
|
| 43 | | U992-G8CH |
|
5A
|
Pterin-based small molecule inhibitor capable of binding to the secondary pocket in the active site of ricin-toxin A chain
|
Ryota Saito
|
英語 / English
|
PLoS ONE
|
2022
|
17
|
|
| 44 | | 5Z5B-JBVW |
2017G167; 2019G027; 2021G031
|
5A/ 5A; NW12A/NW12A; NE3A/NE3A; 17A/17A
|
Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase
|
中村 照也/Teruya NAKAMURA; 山縣 ゆり子/Yuriko YAMAGATA
|
英語 / English
|
Proceedings of the National Academy of Sciences of the United States of America
|
2022
|
119
|
|
| 45 | | RM1B-MEKJ |
|
NW12A , 5A
|
Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH
|
Masayuki Oda
|
英語 / English
|
Protein Journal
|
2022
|
41
|
71
|
| 46 | | MWRY-YGJR |
2017G610; 2016G532; 2017G051; 2017G513; 2018G538; 2019G097; 2019G508; 2019G518; 2020G580; 2021G013; 2021G508
|
5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Structure of lactate oxidase from Enterococcus hirae revealed new aspects of active site loop function: Productinhibition mechanism and oxygen gatekeeper
|
吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Protein Science
|
2022
|
31
|
|
| 47 | | C3TZ-T56J |
2020G125
|
5A/ 5A; NW12A/NW12A
|
Molecular basis for thermal stability and affinity in a VHH: Contribution of the framework region and its influence in the conformation of the CDR3
|
中木戸 誠/Makoto NAKAKIDO; 津本 浩平/Kouhei TSUMOTO; MARTINEZ CAAVEIRO Jose Manuel/Jose Manuel MARTINEZ CAAVEIRO; 木下 清晶/Seisho KINOSHITA
|
英語 / English
|
Protein Science
|
2022
|
31
|
e4450
|
| 48 | | CSUN-T1UR |
2013G122
|
5A/ 5A
|
Revisiting the concept of peptide bond planarity in an iron-sulfur protein by neutron structure analysis
|
YuYa HANAZONO; 平野 優/Yu HIRANO; Kazuki TAKEDA; Kartsuhiro KUSAKA; 玉田 太郎/Taro TAMADA; Kunio MIKI
|
英語 / English
|
Science Advances
|
2022
|
8
|
|
| 49 | | JHS4-GEAC |
2018G036
|
5A, NE3A, NW12A
|
Crystal structure of the AlbEF complex involved in subtilosin A biosynthesis
|
Ishida, Kohki
|
英語 / English
|
Structure
|
2022
|
30
|
1637
|
| 50 | | K616-EHTW |
2019G657; 2021G673
|
5A/ 5A; 5A/ 5A
|
Microchannel device system that can control the number of nucleation to grow large single crystal of protein / タンパク質大形単結晶育成のための生成結晶核数制御を可能とする微小流路デバイスシステム
|
田中 伊知朗/Ichiro TANAKA
|
日本語 / Japanese
|
化学工業 / Chemical Industry
|
2022
|
73
|
473
|
