| 1 | | R1NH-8V8G |
2023G072
|
1A
|
Structural Basis for 3-Amino-3-carboxypropyl Transfer in Nocardicin Biosynthesis
|
Yaojie Gao
|
英語 / English
|
Journal of the American Chemical Society
|
2025
|
147
|
33589
|
| 2 | | 7866-G17S |
|
BL-1A
|
Biochemical and structural analysis of the mechanism for the catalysis and specificity of cellobiose 2-epimerase from Rhodothermus marinus
|
Wataru Saburi
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2025
|
89
|
973
|
| 3 | | JC08-PGEH |
|
BL-1A, BL-17A
|
Phylogenetic and structural insights into the origin of C-type lectin Mincle in vertebrates
|
Taiki Ito
|
英語 / English
|
Immunogenetics
|
2025
|
77
|
|
| 4 | | RND8-F2KH |
|
BL-1A
|
Mechanism of Herbicidal Action and Rice Selectivity of Iptriazopyrid: A Novel Azole Carboxamide-Based Inhibitor of 4-Hydroxyphenylpyruvate Dioxygenase
|
Nishio, Takashi
|
英語 / English
|
Journal of Agricultural and Food Chemistry
|
2025
|
73
|
15950
|
| 5 | | B5ZE-JNTZ |
|
BL-1A
|
Multiple myeloma?associated non-crystalline proximal tubulopathy and crystalline cast nephropathy: Biochemical and structural features of disease-causing monoclonal kappa light chains
|
Toshinori Ezawa
|
英語 / English
|
FASEB Journal
|
2025
|
39
|
|
| 6 | | R9EY-XD1A |
|
BL-1A, BL-5A
|
Capturing a glycosylase reaction intermediate in DNA repair by freeze-trapping of a pH-responsive hOGG1 mutant
|
Unno, Masaki
|
英語 / English
|
Nucleic Acids Research
|
2025
|
53
|
|
| 7 | | MTVF-504V |
|
1A , 17A
|
Structural insights into a bacterial terpene cyclase fused with haloacid Dehalogenase-like phosphatase
|
K. , Fujiyama, Keisuke
|
英語 / English
|
Chemical Science
|
2025
|
16
|
15310
|
| 8 | | 56NV-D8YK |
2018G559
|
1A
|
Identification and structure-guided development of triazole urea-based selective antagonists of Arabidopsis karrikin signaling
|
Wang J.
|
英語 / English
|
Nature Communications
|
2025
|
16
|
|
| 9 | | 501A-TUPV |
|
1A, 17A
|
Structural characterization of pyruvic oxime dioxygenase, a key enzyme in heterotrophic nitrification
|
Tsujino S.
|
英語 / English
|
Journal of Bacteriology
|
2025
|
207
|
|
| 10 | | 3V56-03CK |
2021G561, 2023G53, 2024G035
|
NW12A, 1A, 5A, 17A
|
The Diverse Binding Modes Explain the Nanomolar Levels of Inhibitory Activities Against 1-Deoxy-d-Xylulose 5-Phosphate Reductoisomerase from Plasmodium falciparum Exhibited by Reverse Hydroxamate Analogs of Fosmidomycin with Varying N-Substituents
|
Takada, Sana
|
英語 / English
|
Macromolecules
|
2025
|
30
|
|
| 11 | | W1FY-GF6F |
|
1A, 5A, 17A, NW12
|
Expanding the Chemical Space of Reverse Fosmidomycin Analogs
|
Talea Knak
|
英語 / English
|
ACS Medicinal Chemistry Letters
|
2025
|
16
|
136
|
| 12 | | NY4Z-2KBM |
|
1A
|
Structure-function analysis of 2-sulfamoylacetic acid synthase in altemicidin biosynthesis
|
Mori, Takahiro
|
英語 / English
|
Journal of Antibiotics
|
2025
|
78
|
149
|
| 13 | | C2AM-AKKC |
2025G036
|
1A/1A
|
Mechanistic and Structural Analyses of Non-Heme Iron Enzyme TqaM for α-Tertiary Amino Acid Synthesis
|
阿部 郁朗/Ikuro ABE
|
英語 / English
|
Journal of the American Chemical Society
|
2025
|
147
|
41867
|
| 14 | | 37A4-TKYH |
2022G044
|
1A/1A
|
Molecular basis for the diversification of lincosamide biosynthesis by pyridoxal phosphate-dependent enzymes.
|
阿部 郁朗/Ikuro ABE
|
英語 / English
|
Nature Chemistry
|
2025
|
17
|
256
|
| 15 | | WJCE-2C22 |
2014G673; 2016G617; 2018G636; 2020G658
|
5A/ 5A; NW12A/NW12A; 1A/1A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; NW12A/NW12A
|
Crystal Structures of Antigen-Binding Fragment of Anti-Osteocalcin Antibody KTM219 / 抗オステオカルシン抗体KTM219の抗原結合断片の結晶構造
|
矢崎 崇真/Shuma YAZAKI; 小松 美沙紀/Misaki KOMATSU; Jinhua Dong; 上田 宏; 新井 亮一/Ryoichi ARAI
|
英語 / English
|
International Journal of Molecular Sciences
|
2025
|
26
|
|
| 16 | | RB4J-G31X |
2017G169
|
1A/1A
|
Combined structural and FMO-based insights into shaft pilin polymerization mechanism in Streptococcus sanguinis
|
武部克紀; 宮川柊兵; 中田 匡宣/Masanobu NAKATA
|
英語 / English
|
International Journal of Biological Macromolecules
|
2025
|
332
|
|
| 17 | | 1WHF-D1T0 |
JP21am0101071; 2017G141
|
1A/1A; 1A/1A
|
De novo design of ATPase based on a blueprint optimized for harboring the P-loop motif
|
Takahiro Kosugi; Mikio Tanabe; Nobuyasu Koga
|
英語 / English
|
Protein Science
|
2025
|
34
|
|
| 18 | | UFSC-CDU1 |
2021G001
|
1A
|
Structural basis of transglucosylation in dextran dextrinase, a homolog of anomer-inverting GH15 glucoside hydrolases
|
田上 貴祥/Takayoshi TAGAMI; 松垣 直宏
|
英語 / English
|
Journal of Biological Chemistry
|
2025
|
301
|
|
| 19 | | VKCE-C3FV |
2022PF-B005; 2022G521
|
1A/1A; 17A/17A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A
|
Mechanism and Utility of the ATP-Grasp Enzyme BesA for the Synthesis of Non-natural Alkyne-Containing Dipeptides Applicable for Click Chemistry
|
大塚 穂乃/Hono OTSUKA; 藤城 貴史/Takashi FUJISHIRO
|
英語 / English
|
ACS Chemical Biology
|
2025
|
20
|
2521
|
| 20 | | B0HW-DU83 |
2020RP-16; 2019RP-03; 2021PF-B001; 2021PF-B001; 2022PF-B005; 2023PF-B016; 2022G521; 2024G508
|
17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A; 1A/1A; 5A/ 5A; 17A/17A; 1A/1A; 5A/ 5A; 17A/17A; 1A/1A; 17A/17A; 1A/1A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A
|
Discovery of an Aziridine-Based Inhibitor That Targets Cysteine Desulfurase Type II SufS via High-Throughput X-ray Crystallography / Discovery of an Aziridine-Based Inhibitor That Targets Cysteine Desulfurase Type II SufS via High-Throughput X-ray Crystallography
|
藤城 貴史/Takashi FUJISHIRO; 大塚 穂乃/Hono OTSUKA; 中村 亮裕/Ryosuke NAKAMURA; 藤原隆司
|
英語 / English
|
ACS Medicinal Chemistry Letters
|
2025
|
16
|
1546
|
| 21 | | JSTY-KT73 |
2020G514; 2022G521; 2022PF-B005; 2021PF-B001; 2018G505; 2018RP-28; 2020RP-16
|
5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; 1A/1A; 17A/17A; 1A/1A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 17A/17A; NW12A/NW12A; 17A/17A; NW12A/NW12A
|
Visualizing thiazolidine ring formation in the reaction of D-cysteine and pyridoxal-5′-phosphate within L-cysteine desulfurase SufS
|
中村 亮裕/Ryosuke NAKAMURA; 藤城 貴史/Takashi FUJISHIRO
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2025
|
754
|
|
| 22 | | SFJV-NG2V |
2021G100
|
1A/1A
|
Discovery of a distinct type of methylenetetrahydrofolate reductase family that couples with tetrahydrofolate-dependent demethylases
|
千田 俊哉/Toshiya SENDA
|
英語 / English
|
Communications Biology
|
2025
|
323
|
|
| 23 | | FAP6-U5EZ |
2021G054; 2023G543
|
1A/1A; 17A/17A; 17A/17A
|
PI5P4K inhibitors: promising opportunities and challenges.
|
竹内 恒/Koh TAKEUCHI; Toshiya Senda; Atsuo Sasaki
|
英語 / English
|
FEBS Journal
|
2025
|
292
|
4446
|
| 24 | | UHUV-JDT4 |
2019G017; 2019G018; 2020G021; 2020RP-04; 2021G052; 2022G034; 2023G052
|
1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; 1A/1A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A; NE3A/NE3A
|
Crystal Structure of Glycoside Hydrolase Family 20 Lacto-N-biosidase from Soil Bacterium Streptomyces sp. Strain 142
|
藤尾 則揮/Noriki FUJIO; 伏信 進矢/Shinya FUSHINOBU; 山田 千早/Chihaya YAMADA
|
英語 / English
|
Journal of Applied Glycoscience
|
2025
|
72
|
|
| 25 | | 1UBT-75M2 |
2019G017; 2019G018; 2020G021; 2020RP-04; 2021G052; 2022G034
|
1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; 1A/1A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A
|
Identification and structural characterization of a novel acetyl xylan esterase from Aspergillus oryzae
|
山田 千早/Chihaya YAMADA; 伏信 進矢/Shinya FUSHINOBU
|
英語 / English
|
FEBS Journal
|
2025
|
292
|
2527
|
| 26 | | RBUU-531R |
2017G007; 2019G049; 2021G016; 2023G038
|
1A/1A; 17A; NE3A; 1A/1A; 17A/17A; 1A/1A; 17A; 1A; 17A
|
Identification of the binding site and immunoreactivity of anti-Aβ antibody 11A1: Comparison with the toxic conformation-specific TxCo-1 antibody
|
Rara Fukui; Uswah Hafizal; Yusuke Kageyama; Yumi Irie; Yuka Matsushima; Katsuma Hosoi; Takahisa Nakayama; Daita Kaneda; Yoshio Hashizume; Kunio Miki; Akiko Kita; Ken-ichi Mukaisho; Ryoji Kushima; Ikuo Tooyama; Kazuhiro Irie
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2025
|
758
|
|
| 27 | | XHDW-R6CT |
2024G029
|
1A/1A
|
Structural basis for the allosteric activation of Lon by the heat shock protein LarA
|
CHANG Chungi/Chungi CHANG
|
英語 / English
|
Nature Communications
|
2025
|
16
|
|
| 28 | | C5JB-VXTP |
2017G595; 2018G048; 2019G535; 2021G507; 2023G511
|
1A/1A; 1A/1A; 1A/1A; 1A/1A; 5A/ 5A
|
Structure?Activity Relationship of an All-α-helical Prenyltransferase Reveals the Mechanism of Indole Prenylation
|
大城 拓未/Takumi OSHIRO; Shuta Uehara; Arisa Suto; 田中 良和/Yoshikazu TANAKA; Takuya Ito; Yoshio Kodera; 松井 崇/Takashi MATSUI
|
英語 / English
|
Biochemistry
|
2025
|
64
|
4196
|
| 29 | | C74Z-HVRD |
|
BL-1A
|
Characterizing an amidase and its operon from actinomycete bacteria responsible for paraben catabolism
|
Takenoya, Mihoko
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2024
|
88
|
1047
|
| 30 | | 3WGH-BH2P |
|
1A
|
Functional analysis of an α-ketoglutarate-dependent non-heme iron oxygenase in fungal meroterpenoid biosynthesis
|
Tao, Hui
|
英語 / English
|
Methods in Enzymology
|
2024
|
704
|
173
|
| 31 | | S8FZ-GBTU |
|
1A
|
Structural insight into the distinct regulatory mechanism of the HEPN?MNT toxin-antitoxin system in Legionella pneumophila
|
Jin, Chenglong
|
英語 / English
|
Nature Communications
|
2024
|
15
|
|
| 32 | | RJK2-DFGT |
2020G016, 2022G130
|
1A
|
Light-driven anion-pumping rhodopsin with unique cytoplasmic anion-release mechanism
|
Ishizuka, Tomohiro
|
英語 / English
|
Journal of Biological Chemistry
|
2024
|
300
|
|
| 33 | | EMRF-4PX1 |
2017G148
|
1A
|
New Catalytic Residues and Catalytic Mechanism of the RNase T1 Family
|
Takebe K.
|
英語 / English
|
ACS Bio & Med Chem Au
|
2024
|
4
|
257
|
| 34 | | C5M1-5MHM |
2022G563
|
1A
|
Catalysis driven by an amyloid?substrate complex
|
Sawazaki T.
|
英語 / English
|
Proceedings of the National Academy of Sciences of the United States of America
|
2024
|
121
|
|
| 35 | | CDRG-B4XT |
|
1A
|
Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
|
Hnin, Saw Y. Y.
|
英語 / English
|
ACS Catalysis
|
2024
|
14
|
11865
|
| 36 | | MUGZ-R9PK |
|
1A
|
De Novo Discovery of Pseudo-Natural Prenylated Macrocyclic Peptide Ligands
|
Inoue, Sumika
|
英語 / English
|
Angewandte Chemie-International Edition
|
2024
|
63
|
|
| 37 | | GM59-85EX |
|
1A
|
Stabilization of adalimumab Fab through the introduction of disulfide bonds between the variable and constant domains
|
Yoshikawa, Moeka
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2024
|
700
|
|
| 38 | | UKGM-W46S |
2016G048, 2016R-19
|
1A, 17A
|
Unraveling the fastest myosin: Discovery history and structure-function relationships of algae Chara myosin XI
|
Kohji Ito
|
英語 / English
|
Biophysics and Physicobiology
|
2024
|
21
|
|
| 39 | | UKK5-PTCZ |
2016G609, 2017G169
|
1A
|
Analysis of FctB3 crystal structure and insight into its structural stabilization and pilin linkage mechanisms
|
Takebe, Katsuki
|
英語 / English
|
Archives of Microbiology
|
2024
|
206
|
|
| 40 | | XBDD-N3BY |
|
1A, 5A
|
CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement
|
Sam-Geun Kong
|
英語 / English
|
Plant Cell
|
2024
|
36
|
1159
|
| 41 | | 4A5A-X8GT |
2024G011
|
1A/1A
|
Structure-function analysis of carrier protein-dependent 2-sulfamoylacetyl transferase in the biosynthesis of altemicidin
|
阿部 郁朗/Ikuro ABE
|
英語 / English
|
Nature Communications
|
2024
|
15
|
|
| 42 | | YYD1-P1YK |
2021G638
|
1A/1A; 17A/17A
|
THOUSAND-GRAIN WEIGHT 6, which is an IAA-glucose hydrolase, preferentially recognizes the structure of the indole ring
|
Tatsuki Akabane; Nobuhiro Suzuki; Kazuyoshi Ikeda; Tomoki Yonezawa; Satoru Nagatoishi; Hiroyoshi Matsumura; Takuya Yoshizawa; Wataru Tsuchiya; Satoshi Kamino; Kouhei Tsumoto; Ken Ishimaru; Etsuko Katoh; Naoki Hirotsu
|
英語 / English
|
Scientific Reports
|
2024
|
14
|
|
| 43 | | PNBE-NTZ9 |
2019G075; 2019G595
|
1A/1A; 17A/17A
|
Structural dynamics of the Ca2+-regulated cutinase towards structure-based improvement of PET degradation activity
|
沼本 修孝/Nobutaka NUMOTO
|
英語 / English
|
International Journal of Biological Macromolecules
|
2024
|
281
|
136597
|
| 44 | | YKWB-9985 |
2018RP-31; 2020RP-26
|
1A/1A; 1A/1A
|
Deviated binding of anti?HBV nucleoside analog E?CFCP?TP to the reverse transcriptase active site attenuates the effect of drug?resistant mutations
|
安武 義晃/Yoshiaki YASUTAKE
|
英語 / English
|
Scientific Reports
|
2024
|
14
|
|
| 45 | | 1K9T-2ERW |
2024G502
|
1A
|
X-ray crystallographic analysis of the NADH complex structure of FMN-NADH dependent indigo reductase from Bacillus smithii involved in indigo dyeing / 藍染めに関わる Bacillus smithii 由来インジゴ還元酵素/NADH 複合体のX 線結晶構造解析
|
YONEDA Kazunari
|
日本語 / Japanese
|
東海大学紀要(先進生命科学研究所) / Bulletin of the Institute of Advanced Biosciences, Tokai University
|
2024
|
9
|
1
|
| 46 | | 5V36-NMBE |
2017G554; 2019G592
|
17A/17A; 1A/1A; 17A/17A
|
Interaction of Cephalosporins with Human Serum Albumin: A Structural Study
|
河合 聡人/Akito KAWAI
|
英語 / English
|
Journal of Medicinal Chemistry
|
2024
|
67
|
14175
|
| 47 | | 284A-7YFW |
2017G554; 2019G592
|
17A/17A; 1A/1A; 17A/17A
|
Structural insights into the molecular mechanism of high-level ceftazidime-avibactam resistance conferred by CMY-185
|
河合 聡人/Akito KAWAI
|
英語 / English
|
mBio
|
2024
|
15
|
|
| 48 | | JA64-F9S7 |
2023G099
|
1A/1A
|
Characterizing an amidase and its operon from actinomycete bacteria responsible for paraben catabolism
|
竹野谷 美穂子/Mihoko TAKENOYA; Yoshiaki HIRATSUKA; Kaho SHIMAMURA; Shinsaku ITO; Yasuyuki SASAKI; 矢嶋 俊介/Shunsuke YAJIMA
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2024
|
0
|
1
|
| 49 | | ZW6F-4FUM |
2018G075
|
1A/1A
|
X-ray crystal structure of proliferating cell nuclear antigen 1 from $Aeropyrum pernix$
|
山内 崇浩; 菊池 槙子/Makiko KIKUCHI; 飯塚 康人/Yasuhito IIZUKA; 角田 大/Masaru TSUNODA
|
英語 / English
|
Acta Crystallographica Section F
|
2024
|
80
|
|
| 50 | | ZGDZ-HA0E |
2017G088; 2017G089; 2018G043; 2019G017; 2019G018; 2020G021; 2020RP-04; 2021G052; 2022G034; 2023G052
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; 1A/1A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; 17A/17A; NW12A/NW12A; NE3A/NE3A
|
Functional and structural analyses of a highly multifunctional enzyme TM1270 from the hyperthermophile Thermotoga maritima
|
新田 峻平/Shunpei NITTA; 伏信 進矢/Shinya FUSHINOBU
|
英語 / English
|
ACS Catalysis
|
2024
|
14
|
18817
|
