| 1 | | YV9T-PXH8 |
2012G664
|
1A/1A; 17A
|
Structures of the karyopherins Kap121p and Kap60p bound to the nuclear pore-targeting domain of the SUMO protease Ulp1p
|
平野 秀美/Hidemi HIRANO; 小林 純也/Junya KOBAYASHI; 松浦 能行/Yoshiyuki MATSUURA
|
英語 / English
|
Journal of Molecular Biology
|
2017
|
429
|
249
|
| 2 | | UJ3T-1JY2 |
2018G609
|
17A/17A
|
Structural and biochemical characterization of the recognition of the 53BP1 nuclear localization signal by importin-alpha
|
松浦 能行/Yoshiyuki MATSUURA
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2019
|
510
|
236
|
| 3 | | 34BT-WB9R |
2016G513
|
17A/17A
|
High-resolution structural analysis shows how different crystallographic environments can induce alternative modes of binding of a phosphotyrosine peptide to the SH2 domain of Fer tyrosine kinase
|
松浦 能行/Yoshiyuki MATSUURA
|
英語 / English
|
Protein Science
|
2019
|
28
|
2011
|
| 4 | | EVX6-Z21B |
2018G609; 2020G574
|
17A/17A; 17A/17A
|
Structures of importin-alpha bound to the wild-type and an internal deletion mutant of the bipartite nuclear localization signal of HIF-1alpha
|
松浦 能行/Yoshiyuki MATSUURA; 宮脇 和也/Kazuya MIYAWAKI
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2023
|
652
|
1
|
| 5 | | F511-19RX |
2018G609; 2020G574
|
17A/17A; 17A/17A
|
Crystallographic data of an importin-alpha3 dimer in which the two protomers are bridged by a bipartite nuclear localization signal
|
松浦 能行/Yoshiyuki MATSUURA
|
英語 / English
|
Data in Brief
|
2023
|
47
|
|
| 6 | | MKZ3-GU8P |
2016G162
|
5A/ 5A; 17A/17A; NW12A/NW12A
|
Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization
|
富田 武郎/Takeo TOMITA; 小林 正弥/Masaya KOBAYASHI; 葛山 智久/Tomohisa KUZUYAMA
|
英語 / English
|
Angewandte Chemie-International Edition
|
2017
|
|
|
| 7 | | 6US0-KZC6 |
2014R-42
|
1A/1A; 17A
|
Co(II)/Co(I) Reduction-Induced Axial Histidine-Flipping in Myoglobin Reconstituted with a Cobalt Tetradehydrocorrin as a Methionine Synthase Model
|
溝端 栄一/Eiichi MIZOHATA
|
英語 / English
|
Chemical Communications
|
2014
|
50
|
12560
|
| 8 | | TTWJ-5YFM |
2014R-42
|
1A/1A; 17A
|
Structure-Based Design of a Streptavidin Mutant Specific for an Artificial Biotin Analogue
|
溝端 栄一/Eiichi MIZOHATA
|
英語 / English
|
Journal of Biochemistry
|
2015
|
157
|
467
|
| 9 | | T6SG-TB35 |
2015G616; 2017G547
|
17A/17A; 17A/17A
|
Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor
|
新野 睦子/Mutsuko NIINO
|
英語 / English
|
Structure
|
2019
|
27
|
741
|
| 10 | | UGD9-79K7 |
2017G574; 2019G548; 2021G672
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A
|
Molecular Basis for Enzymatic Aziridine Formation via Sulfate Elimination
|
黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA
|
英語 / English
|
Journal of the American Chemical Society
|
2022
|
144
|
16164
|
| 11 | | VF29-11ZZ |
2017G574; 2019G548; 2021G672
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A
|
Mechanisms of Sugar Aminotransferase-like Enzymes to Synthesize Stereoisomers of Non-proteinogenic Amino Acids in Natural Product Biosynthesis
|
黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA
|
英語 / English
|
ACS Chemical Biology
|
2023
|
18
|
385
|
| 12 | | 2M80-X1SY |
2014R-22; 2012G001; 2013R-11; 2014G593
|
1A/1A; 5A/ 5A; 17A/17A; 1A/1A; 17A/17A; 5A/ 5A
|
X-Ray Crystallographic Structure of RNase Po1 That Exhibits Antitumor Activity.
|
Hiroko Kobayashi; Takuya Katsutani, Yumiko Hara, Naomi Motoyoshi, Tadashi Itagaki, Fusamichi Akita, Akifumi Higashiura, Yusuke Yamada, Norio Inokuchi and Mamoru Suzuki
|
英語 / English
|
Biological & Pharmaceutical Bulletin
|
2014
|
37
|
968
|
| 13 | | 83T4-PZ06 |
2012G001; 2013R-11; 2014R-22; 2014G593; 2015R-16
|
5A/ 5A; 17A/17A; 1A/1A; 17A/17A; 1A/1A; 5A/ 5A; 17A/17A
|
Effect of the Replacement of Aspartic Acid/glutamic Acid Residues with Asparagine/Glutamine Residues in RNase He1 from Hericium Erinaceus on Inhibition of Human Leukemia Cell Lineproliferation.
|
Kobayashi H; Motoyoshi N, Itagaki T, Suzuki M, Inokuchi N.
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2015
|
79
|
211
|
| 14 | | SGBS-R7X4 |
2019G051
|
17A
|
Synthesis of a Negatively Curved Nanocarbon Molecule with an Octagonal Omphalos via Design-of-Experiments Optimizations Supplemented by Machine Learning
|
Koki Ikemoto; Misato Akiyoshi; Tatsuru Mio; Kaito Nishioka; Sota Sato; Hiroyuki Isobe
|
英語 / English
|
Angewandte Chemie-International Edition
|
2022
|
61
|
e202204035
|
| 15 | | 30NY-WF2K |
2015G097
|
17A/17A
|
Synthesis and Structures of pi-Extended [n]Cyclo-para-phenylenes (n=12, 16, 20) Containing n/2 Nitrogen Atoms
|
Koki Ikemoto; Masahiro Fujita; Pei Chui Too; Ya Lin Tnay; 佐藤 宗太/Sota SATO; Shunsuke Chiba; Hiroyuki Isobe
|
英語 / English
|
Chemistry Letters
|
2016
|
45
|
658
|
| 16 | | MG7G-1RV0 |
2015G097
|
17A/17A
|
Synthesis and Bowl-in-Bowl Assembly of a Geodesic Phenylene Bowl
|
Koki IKEMOTO; 小林 良/Ryo KOBAYASHI; 佐藤 宗太/Sota SATO; Hiroyuki ISOBE
|
英語 / English
|
Angewandte Chemie-International Edition
|
2017
|
56
|
6511
|
| 17 | | WW4P-SABG |
2015G097
|
17A/17A
|
Entropy-Driven Ball-in-Bowl Assembly of Fullerene and Geodesic Phenylene Bowl
|
Koki IKEMOTO; 小林 良/Ryo KOBAYASHI; 佐藤 宗太/Sota SATO; Hiroyuki ISOBE
|
英語 / English
|
Org. Lett.
|
2017
|
19
|
2362
|
| 18 | | T6UM-F14B |
2017G082
|
17A/17A
|
Fluctuating Carbonaceous Networks with a Persistent Molecular Shape: A Saddle-Shaped Geodesic Framework of 1,3,5-Trisubstituted Benzene (Phenine)
|
池本 晃喜/Koki IKEMOTO; Jennie Lin; Ryo Kobayashi; 佐藤 宗太/Sota SATO; Hiroyuki Isobe
|
英語 / English
|
Angewandte Chemie-International Edition
|
2018
|
57
|
8555
|
| 19 | | 1YR1-22CY |
2019G051
|
17A/17A
|
Synthesis of a Hemispherical Geodesic Phenine Framework by a Polygon Assembling Strateg
|
Tatsuru Mio; Koki Ikemoto; 佐藤 宗太/Sota SATO; Hiroyuki Isobe
|
英語 / English
|
Angewandte Chemie-International Edition
|
2020
|
59
|
6567
|
| 20 | | UME4-E5VH |
2019G051
|
17A/17A
|
A nitrogen-doped nanotube molecule with atom vacancy defects
|
Koki Ikemoto; Seungmin Yang; Hisashi Naito; Motoko Kotani; 佐藤 宗太/Sota SATO; Hiroyuki Isobe
|
英語 / English
|
Nature Communications
|
2020
|
11
|
|
| 21 | | WRKY-Y983 |
2019G051
|
17A/17A
|
Ineffective OH-Pinning of the Flipping Dynamics of a Spherical Guest within a Tight-Fitting Tube
|
松野 太輔/Taisuke MATSUNO; 染谷 真希/Maki SOMEYA; 佐藤 宗太/Sota SATO; Satoshi Maeda; Hiroyuki Isobe
|
英語 / English
|
Angewandte Chemie-International Edition
|
2020
|
59
|
|
| 22 | | YRVC-JP3V |
2017G082; 2019G051
|
1A/1A; 17A/17A
|
Crystalline naphthylene macrocycles capturing gaseous small molecules in chiral nanopores
|
松野 太輔/Taisuke MATSUNO
|
英語 / English
|
Chemistry - An Asian Journal
|
2020
|
15
|
3829
|
| 23 | | CG4N-3GEA |
2019G051
|
17A/17A
|
Cycloparaphenylene‐Phenalenyl Radical and Its Dimeric Double Nanohoop
|
Michal Juricek; Yong Yang; Olivier Blacque; 佐藤 宗太/Sota SATO
|
英語 / English
|
Angewandte Chemie-International Edition
|
2021
|
60
|
13529
|
| 24 | | SF3V-4M8G |
2019G051
|
17A/17A
|
Cycloparaphenylene Double Nanohoop: Structure, Lamellar Packing, and Encapsulation of C60 in the Solid State
|
Yong Yang; Shangxiong Huangfu; 佐藤 宗太/Sota SATO; Michal Jur??ek
|
英語 / English
|
Organic Letters
|
2021
|
23
|
7943
|
| 25 | | 5RXC-RUP0 |
2012G059; 2014G026
|
5A/ 5A; 1A/1A; NW12A/NW12A; 17A/17A; NW12A/NW12A
|
Motility and microtubule depolymerization mechanisms of the Kinesin-8 motor, KIF19A.
|
王 斗斗/Doudou WANG; 仁田 亮/Ryo NITTA; 井上 茂之/Shigeyuki INOUE; 廣川 信隆/Nobutaka HIROKAWA
|
英語 / English
|
eLife
|
2016
|
|
|
| 26 | | 414P-6WZX |
2009G008; 2011G027
|
17A/17A; 17A/17A
|
Structural basis for ligand capture and release by the endocytic receptor ApoER2
|
禾 晃和/Terukazu NOGI; 安井 典久/Norihisa YASUI; 高木 淳一/Junichi TAKAGI
|
英語 / English
|
EMBO Reports
|
2017
|
18
|
982
|
| 27 | | 3T3T-X9TX |
2017G518
|
1A/1A; 17A/17A
|
Application of the NZ-1 Fab as a crystallization chaperone for PA tag-inserted target proteins.
|
田村 梨沙子/Risako TAMURA; 禾 晃和/Terukazu NOGI
|
英語 / English
|
Protein Science
|
2019
|
28
|
823
|
| 28 | | 0N6W-U6M5 |
2019G510
|
1A/1A; 17A/17A
|
Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion
|
禾 晃和/Terukazu NOGI; 有賀 理江/Rie ARUGA
|
英語 / English
|
Acta Crystallographica Section D
|
2021
|
77
|
645
|
| 29 | | TWPH-CSP4 |
2017G518; 2019G510
|
17A/17A; 1A/1A; 17A/17A; 1A/1A
|
Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP
|
禾 晃和/Terukazu NOGI; 高貫 一徳/Kazunori TAKANUKI; 三好 賢一/Kenichi MIYOSHI; 有賀 理江/Rie ARUGA
|
英語 / English
|
Science Advances
|
2022
|
8
|
|
| 30 | | TCNW-5CR3 |
2013G526; 2015G517
|
17A/17A; 17A/17A
|
Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D
|
禾 晃和/Terukazu NOGI; 田中 翼/Tsubasa TANAKA
|
英語 / English
|
Protein Science
|
2022
|
31
|
e4452
|
| 31 | | SSMA-5CGA |
2021G606
|
17A
|
Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells
|
禾 晃和/Terukazu NOGI; 安達 友里子/Yuriko ADACHI
|
英語 / English
|
Protein Expression and Purification
|
2023
|
208-209
|
|
| 32 | | 6U76-NJWU |
2021G071
|
17A/17A
|
Sticklac-Derived Natural Compounds Inhibiting RNase H Activity of HIV-1 Reverse Transcriptase
|
星野 忠次/Tyuji HOSHINO
|
英語 / English
|
Journal of Natural Products
|
2023
|
86
|
2487
|
| 33 | | 111W-N5PT |
2015G645; 2017G696
|
1A; 5A; 1A; 5A; NE3A; 17A
|
Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass
|
藤橋 雅宏/Masahiro FUJIHASHI; Sato, Tsutomu; Tanaka, Yuma; Yamamoto, Daisuke; Nishi, Tomoyuki; Ueda, Daijiro; Murakami, Mizuki; Yasuno, Yoko; Sekihara, Ai; Fuku, Kazuma; Shinada, Tesuro; 三木 邦夫/Kunio MIKI
|
英語 / English
|
Chemical Science
|
2018
|
9
|
3754
|
| 34 | | BNC3-VS20 |
2019G530; 2017G696; 2018RP-27; 2019RP-31
|
1A/1A; 5A; 17A; NE3A; 1A; 5A; 17A; NE3A; 1A/1A; 1A/1A; 17A/17A
|
Characterization of Class IB Terpene Synthase: The First Crystal Structure Bound with a Substrate Surrogate
|
Rafaella Stepanova; 稲木 隼人/Hayato INAGI; Kei Sugawara; Kazuya Asada; Tomoyuki Nishi; Daijiro Ueda; Yoko Yasuno; Tetsuro Shinada; 三木 邦夫/Kunio MIKI; 藤橋 雅宏/Masahiro FUJIHASHI; Tsutomu Sato
|
英語 / English
|
ACS Chemical Biology
|
2020
|
15
|
1517
|
| 35 | | G1SA-K74M |
2019G530; 2019G531; 2018RP-27; 2019RP-31; 2020RP-09
|
1A/1A; 1A/1A; 1A/1A; 17A/17A; 1A/1A; 5A/ 5A
|
Altering the Phosphorylation Position of Pyrophosphate-Dependent myo-Inositol-1-Kinase Based on Its Crystal Structure
|
Ryo Tashiro; Takaaki Sato; Haruyuki Atomi; Kunio Miki; 藤橋 雅宏/Masahiro FUJIHASHI
|
英語 / English
|
ACS Chemical Biology
|
2021
|
16
|
794
|
| 36 | | W8VT-2KH5 |
2014G504; 2015G007; 2016G507; 2017G011
|
17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 17A/17A; 17A/17A
|
2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
|
松井 崇/Takashi MATSUI; Takeshi KODAMA; 森 貴裕/Takahiro MORI; 只腰 哲弘/Tetsuhiro TADAKOSHI; Hiroshi NOGUCHI; Ikuro ABE; 森田 洋行/Hiroyuki MORITA
|
英語 / English
|
Journal of Biological Chemistry
|
2017
|
292
|
9117
|
| 37 | | TEMX-TKDU |
2016G092; 2017G595; 2018G060
|
1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; NE3A/NE3A; 1A/1A; NE3A/NE3A
|
SDS-induced oligomerization of Lys49-phospholipase A 2 from snake venom
|
松井 崇/Takashi MATSUI; 鎌田 しずか/Shizuka KAMATA; Kentaro Ishii; Takahiro Maruno; Nouran Ghanem; Susumu Uchiyama; Koichi Kato; Atsuo Suzuki; Naoko Oda-Ueda; 小川 智久/Tomohisa OGAWA; 田中 良和/Yoshikazu TANAKA
|
英語 / English
|
Scientific Reports
|
2019
|
9
|
|
| 38 | | 87VT-M55Z |
2011G548; 2013G598; 2015G593
|
NE3A/NE3A; 5A/ 5A; NE3A/NE3A; 1A/1A; 17A/17A; NE3A/NE3A; NW12A/NW12A
|
Structural basis for eIF2B inhibition in integrated stress response
|
柏木 一宏/Kazuhiro KASHIWAGI; 伊藤 拓宏/Takuhiro ITO
|
英語 / English
|
Science
|
2019
|
364
|
495
|
| 39 | | HUKZ-D33Z |
2016G597
|
1A/1A; 17A/17A
|
GEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism.
|
清水 光/Hikaru SHIMIZU
|
英語 / English
|
Proceedings of the National Academy of Sciences of the United States of America
|
2018
|
115
|
9563
|
| 40 | | TBNS-ZSDJ |
2017G114
|
1A; 17A; AR NE3A
|
The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6
|
Ayaka Harada; Naofumi Kamimura; Koh Takeuchi; Yu Hong Yang; Eiji Masai; Toshiya Senda
|
英語 / English
|
FEBS Journal
|
2017
|
284
|
1855
|
| 41 | | RW4V-CBAM |
2011G020; 2013G023; 2015G085
|
5A/ 5A; 5A(SPring-8)/5A(SPring-8); 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 1A/1A; NE3A/NE3A
|
Rational Design of Crystal Contact-Free Space in Protein Crystals for Analyzing Spatial Distribution of Motions within Protein Molecules
|
松岡 礼/Rei MATSUOKA; 嶋田 睦/Atsushi SHIMADA; 神田 大輔/Daisuke KOHDA; 小室 靖明 / Yasuaki KOMURO; 杉田 有治 / Yuji SUGITA
|
英語 / English
|
Protein Science
|
2016
|
25
|
754
|
| 42 | | 7ESG-CG7K |
2013G727
|
NW12A/NW12A; 17A
|
High-Resolution Crystal Structure of a Silver(I)?RNA Hybrid Duplex Containing Watson?Crick-like C-Silver(I)-C Metallo-Base Pairs
|
近藤 次郎/Jiro KONDO; 多田 能成/Yoshinari TADA
|
英語 / English
|
Angewandte Chemie-International Edition
|
2015
|
54
|
13323
|
| 43 | | 2VFG-B17J |
2013G727; 2011G630
|
NE3A/NE3A; NW12A/NW12A; BL5A; BL17A; 5A/ 5A; 17A/17A
|
The crystal structure of a 2 ',4 '-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA
|
近藤 次郎/Jiro KONDO; Yusuke Nomura; 北原 佑季子Yukiko Kitahara; Satoshi Obika; Hidetaka Torigoe
|
英語 / English
|
Chemical Communications
|
2016
|
52
|
2354
|
| 44 | | Y4S5-53GZ |
2012G519; 2014G532
|
NW12A/NW12A; 5A/ 5A; 17A/17A
|
A structural basis for the antibiotic resistance conferred by an N1-methylation of A1408 in 16S rRNA
|
金澤 宏樹/Hiroki KANAZAWA; 馬場 史花/Fumika BABA; 小金井 麻衣/Mai KOGANEI; 近藤 次郎/Jiro KONDO
|
英語 / English
|
Nucleic Acids Research
|
2017
|
45
|
12529
|
| 45 | | HCH7-J16K |
2014G532; 2015R-29; 2016R-06
|
17A/17A; NW12A; 17A; 17A
|
Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside
|
金澤 宏樹/Hiroki KANAZAWA; 近藤 次郎/Jiro KONDO
|
英語 / English
|
ChemMedChem
|
2018
|
13
|
1541
|
| 46 | | 5D1B-5PE3 |
2010G585; 2012G519; 2014G532; 2016G553; 2018G565
|
5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; 17A/17A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A
|
Structural bases for the fitness cost of the aminoglycoside-resistance and lethal mutations at position 1408 of 16S rRNA
|
近藤 次郎/Jiro KONDO; 小金井 麻衣/Mai KOGANEI
|
英語 / English
|
Molecules
|
2020
|
25
|
159
|
| 47 | | 7A1C-YH6V |
2019G539
|
17A/17A
|
Removal of the A10 adenosine in a DNA-stabilized Ag16 nanocluster
|
近藤 次郎/Jiro KONDO
|
英語 / English
|
RSC Advances
|
2020
|
10
|
23854
|
| 48 | | N1D2-9S1G |
2019G539
|
17A/17A
|
Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster
|
Cecilia Cerretani; 近藤 次郎/Jiro KONDO; Tom Vosch
|
英語 / English
|
CrystEngComm
|
2020
|
22
|
8136
|
| 49 | | G7UT-YZCY |
2019G539
|
17A/17A
|
The effect of inosine on the spectroscopic properties and crystal structure of a NIR-emitting DNA-stabilized silver nanocluster
|
Cecilia Cerretani; Mikkel B. Liisberg; Vanessa R?ck; 近藤 次郎/Jiro KONDO; Tom Vosch
|
英語 / English
|
Nanoscale Advances
|
2022
|
4
|
3212
|
| 50 | | Y4SG-DKT2 |
2017G651
|
5A/ 5A; 17A/17A
|
Specific binding of Hg2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA
|
近藤 次郎/Jiro KONDO; 鳥越秀峰
|
英語 / English
|
Journal of Inorganic Biochemistry
|
2023
|
241
|
112125
|
