| 1 | | VF29-11ZZ |
2017G574; 2019G548; 2021G672
|
5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; NE3A/NE3A
|
Mechanisms of Sugar Aminotransferase-like Enzymes to Synthesize Stereoisomers of Non-proteinogenic Amino Acids in Natural Product Biosynthesis
|
黒澤 菫/Sumire KUROSAWA; 吉田 彩子/Ayako YOSHIDA; 富田 武郎/Takeo TOMITA; 古園 さおり/Saori KOSONO; 西山 真/Makoto NISHIYAMA
|
英語 / English
|
ACS Chemical Biology
|
2023
|
18
|
385
|
| 2 | | 10F3-YAXY |
2019G595
|
17A/17A
|
Improvement of the Thermostability and Activity of the PET-Degrading Enzyme Cut190 toward a Detailed Understanding and Application of the Enzymatic Reaction Mechanism
|
沼本 修孝/Nobutaka NUMOTO; Narutoshi Kamiya; MasayukiOda
|
英語 / English
|
ACS Symposium Series
|
2023
|
1450
|
89
|
| 3 | | 2Z09-Z917 |
2019RP-02; 2020RP-19; 2021PF-B007; 2022PF-B004
|
17A/17A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; 17A/17A
|
Functional and Structural Insights into the Human PPARα/δ/γ Targeting Preferences of Anti-NASH Investigational Drugs, Lanifibranor, Seladelpar, and Elafibranor
|
鎌田 祥太郎/Shotaro KAMATA; Takuji OYAMA
|
英語 / English
|
Antioxidants
|
2023
|
12
|
|
| 4 | | 3AVD-WGJW |
2016G013; 2016G532; 2017G051; 2017G513; 2017G610; 2018G538; 2019G097; 2019G508; 2019G518; 2020G580; 2021G013; 2021G508; 2022G538
|
5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 17A/17A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; NW12A/NW12A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer
|
吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Applied Biochemistry and Biotechnology
|
2023
|
195
|
4537
|
| 5 | | D0RN-4VXC |
2016G532; 2017G610; 2018G538; 2019G508; 2019G518; 2020G580; 2021G508
|
5A/ 5A; 5A/ 5A; 17A/17A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A; 5A/ 5A
|
Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose
|
神鳥 成弘/Shigehiro KAMITORI; 吉田 裕美/Hiromi YOSHIDA
|
英語 / English
|
Applied Microbiology and Biotechnology
|
2023
|
107
|
233
|
| 6 | | EVX6-Z21B |
2018G609; 2020G574
|
17A/17A; 17A/17A
|
Structures of importin-alpha bound to the wild-type and an internal deletion mutant of the bipartite nuclear localization signal of HIF-1alpha
|
松浦 能行/Yoshiyuki MATSUURA; 宮脇 和也/Kazuya MIYAWAKI
|
英語 / English
|
Biochemical and Biophysical Research Communications
|
2023
|
652
|
1
|
| 7 | | VCKV-VFKG |
2018G658; 2018RP-21; 2019RP-02; 2020RP-19; 2021PF-B007; 2022PF-B004; 2022G663
|
5A/ 5A; NE3A/NE3A; 17A/17A; 17A/17A; 5A/ 5A; 17A/17A; 5A/ 5A; 17A/17A; 17A/17A; 5A/ 5A; NW12A/NW12A
|
Current Clinical Trial Status and Future Prospects of PPAR-Targeted Drugs for Treating Nonalcoholic Fatty Liver Disease
|
鎌田 祥太郎/Shotaro KAMATA
|
英語 / English
|
Biomolecules
|
2023
|
13
|
|
| 8 | | N2R5-KAEA |
2021G011; 2019G016
|
1A/1A; 17A/17A; 17A/17A
|
Benziodarone and 6-hydroxybenziodarone are potent and selective inhibitors of transthyretin amyloidogenesis
|
Mineyuki Mizuguchi
|
英語 / English
|
Bioorganic & Medicinal Chemistry
|
2023
|
90
|
|
| 9 | | 5MMB-VSXR |
2021G519; 2019G508; 2017G513
|
5A/ 5A; NE3A/NE3A; 1A/1A; 5A/ 5A; NE3A/NE3A; 17A/17A
|
Characterization and alteration of product specificity of Beijerinckia indica subsp. indica β-fructosyltransferase
|
LI DING/DING LI; 宮坂 祐希/Yuki MIYASAKA; 窪田 有紗/Arisa KUBOTA; 西河 淳/Atsushi NISHIKAWA; 殿塚 隆史/Takashi TONOZUKA
|
英語 / English
|
Bioscience Biotechnology and Biochemistry
|
2023
|
87
|
981
|
| 10 | | FBG5-H4EY |
|
17A
|
A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida
|
Kuroki, Chikako
|
英語 / English
|
Current Research in Biotechnology
|
2023
|
5
|
|
| 11 | | F511-19RX |
2018G609; 2020G574
|
17A/17A; 17A/17A
|
Crystallographic data of an importin-alpha3 dimer in which the two protomers are bridged by a bipartite nuclear localization signal
|
松浦 能行/Yoshiyuki MATSUURA
|
英語 / English
|
Data in Brief
|
2023
|
47
|
|
| 12 | | GKVD-BYRZ |
|
17A
|
Core fucose-specific Pholiota squarrosa lectin (PhoSL) as a potent broad-spectrum inhibitor of SARS-CoV-2 infection
|
Kazuhiko Yamasaki
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
412
|
| 13 | | 4RCT-4C6C |
2021G054
|
1A/1A; 17A/17A
|
Functional molecular evolution of a GTP sensing kinase: PI5P4Kβ.
|
竹内 恒/Koh TAKEUCHI; Miki Senda; Atsuo Sasaki; Toshiya Senda
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
4419
|
| 14 | | 55W4-98V0 |
2023G015; 2021G011; 2019G016
|
17A/17A; 17A/17A; 17A/17A
|
Characterization of the molecular interactions between resveratrol derivatives and death-associated protein kinase 1
|
横山 武司/Takeshi YOKOYAMA
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
4465
|
| 15 | | KE4X-HPTF |
2023G015; 2021G011
|
17A/17A; 17A/17A
|
Rafoxanide, a salicylanilide anthelmintic, interacts with human plasma protein transthyretin
|
横山 武司/Takeshi YOKOYAMA
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
5158
|
| 16 | | HWFR-8TZ0 |
2014G188
|
17A; NW12A
|
X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase
|
Negoro, Seiji
|
英語 / English
|
FEBS Journal
|
2023
|
290
|
3400
|
| 17 | | GUP2-RB0Y |
2017G167; 2019G027; 2021G031
|
5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; 17A/17A; NE3A/NE3A; 5A/ 5A; 17A/17A
|
Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition
|
中村 照也/Teruya NAKAMURA; 山縣 ゆり子/Yuriko YAMAGATA
|
英語 / English
|
FEBS Letters
|
2023
|
597
|
1770
|
| 18 | | 8G79-30VH |
2018G523; 2020G531; 2022G595
|
17A/17A; 17A/17A; 17A/17A
|
Crystal structure of the motor domain of centromere‐associated protein E in complex with a non‐hydrolysable ATP analogue
|
渋谷 明日香/Asuka SHIBUYA; 鈴木 翠/Akira SUZUKI; 横山 英志/Hideshi YOKOYAMA
|
英語 / English
|
FEBS Letters
|
2023
|
597
|
1138
|
| 19 | | 7G6U-4WYT |
2022G595; 2020G531
|
17A/17A; 17A/17A
|
Higher-order structure formation using refined monomer structures of lipid raft markers, Stomatin, Prohibitin, Flotillin, and HflK/C-related proteins
|
横山 英志/Hideshi YOKOYAMA
|
英語 / English
|
FEBS Open Bio
|
2023
|
13
|
926
|
| 20 | | 6NCX-NTS8 |
|
17A
|
Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria
|
Yasuha Nagato
|
英語 / English
|
Journal of Biochemistry
|
2023
|
174
|
291
|
| 21 | | K03Y-N2U7 |
2013G504, 2017G561, and 2019G512
|
NW12A, 17A
|
Neutron crystallography and quantum chemical analysis of bilin reductase PcyA mutants reveal substrate and catalytic residue protonation states
|
Tatsuya Joutsuka
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
|
| 22 | | RS6V-29PJ |
2017G142; 2019G080
|
5A/ 5A; 17A/17A
|
Structural insights into the substrate recognition of serine palmitoyltransferase from Sphingobacterium multivorum
|
生城浩子/Hiroko Ikushiro; 村上大毅; 宮原 郁子/Ikuko MIYAHARA; 神谷 信夫/Nobuo Kamiya; 矢野 貴人/Takato Yano
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
|
| 23 | | HZ2S-DPSM |
2019G001; 2021G015
|
17A/17A; 17A/17A
|
The 9-1-1 DNA clamp subunit RAD1 forms specific interactions with clamp loader RAD17, revealing functional implications for binding-protein RHINO
|
原 幸大/Kodai HARA; 橋本 博
|
英語 / English
|
Journal of Biological Chemistry
|
2023
|
299
|
103061
|
| 24 | | Y4SG-DKT2 |
2017G651
|
5A/ 5A; 17A/17A
|
Specific binding of Hg2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA
|
近藤 次郎/Jiro KONDO; 鳥越秀峰
|
英語 / English
|
Journal of Inorganic Biochemistry
|
2023
|
241
|
112125
|
| 25 | | FN6T-YW4E |
2019G592; 2021G034
|
17A/17A; 17A/17A
|
Structural Basis of the Change in the Interaction Between Mycophenolic Acid and Subdomain IIA of Human Serum Albumin During Renal Failure
|
山崎 啓之/ Keishi YAMASAKI; 河合 聡人/Akito KAWAI
|
英語 / English
|
Journal of Medicinal Chemistry
|
2023
|
66
|
951
|
| 26 | | PY2X-40EX |
2019G016, 2021G011
|
17A
|
Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin
|
Yokoyama, Takeshi
|
英語 / English
|
Journal of Medicinal Chemistry
|
2023
|
66
|
15511
|
| 27 | | 6U76-NJWU |
2021G071
|
17A/17A
|
Sticklac-Derived Natural Compounds Inhibiting RNase H Activity of HIV-1 Reverse Transcriptase
|
星野 忠次/Tyuji HOSHINO
|
英語 / English
|
Journal of Natural Products
|
2023
|
86
|
2487
|
| 28 | | 4ACP-MBXH |
2021G015; 2023G012
|
17A/17A; 17A/17A
|
Uncommon arrangement of self-resistance allows bisynthesis of de novo purine biosynethesis inhibitor that acts as an immunosuppressor.
|
原 幸大/Kodai HARA; 橋本 博
|
英語 / English
|
Journal of the American Chemical Society
|
2023
|
145
|
26883
|
| 29 | | PVRU-D99F |
|
17A
|
Function and Structure of a Terpene Synthase Encoded in a Giant Virus Genome
|
Youngcheol Jung
|
英語 / English
|
Journal of the American Chemical Society
|
2023
|
145
|
25966
|
| 30 | | BVWH-VMCC |
|
17A
|
Crystal Structure of p97-N/D1 Hexamer Complexed with FAF1 UBX Domain
|
Kang W.
|
英語 / English
|
Journal of the Korean Chemical Society
|
2023
|
67
|
348
|
| 31 | | 922V-HKAW |
2009G590; 2012G048; 2014G087; 2014R-40; 2015G020
|
5A/ 5A; 17A/17A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; NW12A/NW12A; 17A/17A; NE3A/NE3A; NW12A/NW12A
|
Substrate recognition mode of a glycoside hydrolase family 42 β-galactosidase from Bifidobacterium longum subspecies infantis(BiBga42A) revealed by crystallographic and mutational analyses
|
Aina GOTOH; 日高 將文/Masafumi HIDAKA; 伏信 進矢/Shinya FUSHINOBU; 片山 高嶺/Takane KATAYAMA
|
英語 / English
|
Microbiome Research Reports
|
2023
|
2
|
|
| 32 | | 47VG-AXU0 |
|
17A
|
Histone H3 lysine 27 crotonylation mediates gene transcriptional repression in chromatin
|
Liu, Nan
|
英語 / English
|
Molecular Cell
|
2023
|
83
|
2206
|
| 33 | | 4GJK-DDSP |
2016G083; 2017G089; 2019G018; 2020RP-04
|
1A/1A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A
|
A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem
|
Toshihiko KATO; 山田 千早/Chihaya YAMADA; ブランパン 騰真/Toma BLANPAIN; 伏信 進矢/Shinya FUSHINOBU; Takane KATAYAMA
|
英語 / English
|
Nature Chemical Biology
|
2023
|
19
|
778
|
| 34 | | RXZH-D5G5 |
2018G505; 2020G514; 2019RP-03; 2020RP-16
|
17A/17A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; 17A/17A; NW12A/NW12A; 5A/ 5A; 17A/17A; 17A/17A; NW12A/NW12A
|
Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases
|
藤城 貴史/Takashi FUJISHIRO; 高岡 恭世/Kyosei TAKAOKA
|
英語 / English
|
Nature Communications
|
2023
|
14
|
|
| 35 | | CKUH-Z69C |
2015G020, 2014R-40, 2015R-36; 2016G083; 2016R-69; 2017G088; 2017G089; 2019G017; 2019G018; 2021G052; 2022G034; 2021PF-B026; 2022PF-B011; 2022PF-B014; 2023G052
|
17A/17A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NW12A/NW12A; 1A/1A; 17A/17A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 5A/ 5A; NE3A/NE3A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NW12A/NW12A; 1A/1A; 5A/ 5A; 17A/17A; NE3A/NE3A; NW12A/NW12A; 15A2/15A2; 10C/10C; 10C/10C; NE3A/NE3A
|
Identification and characterization of endo-α-, exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria
|
ブランパン 騰真/Toma BLANPAIN; 伏信 進矢/Shinya FUSHINOBU; 荒川 孝俊/Takatoshi ARAKAWA; 中島 千穂/Chiho NAKASHIMA; 赤井 元気/Genki AKAI; 清水 伸隆 /Nobutaka SHIMIZU; 福島 陸/Riku FUKUSHIMA; 山田 千早/Chihaya YAMADA
|
英語 / English
|
Nature Communications
|
2023
|
14
|
|
| 36 | | 4HJX-FA9F |
2022G596
|
17A/17A
|
Stoichiometry validation of supramolecular complexes with a hydrocarbon cage host by van ’t Hoff analyses
|
福永 隼也/Toshiya FUKUNAGA; 加藤昂英; 尾仲 柚香/Yuzuka ONAKA; 池本 晃喜/Koki IKEMOTO; 磯部寛之
|
英語 / English
|
Nature Communications
|
2023
|
14
|
|
| 37 | | ZAAU-VZWH |
|
17A
|
Mechanism of U6 snRNA oligouridylation by human TUT1
|
Yamashita, Seisuke
|
英語 / English
|
Nature Communications
|
2023
|
14
|
|
| 38 | | XDZB-ZY33 |
2019G014; 2018G527
|
10C/10C; 17A/17A
|
Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane
|
SONG Hyun Kyu/Hyun Kyu SONG; PARK Si hoon/Si hoon PARK; KIM BongHeon/BongHeon KIM
|
英語 / English
|
Nature Structural & Molecular Biology
|
2023
|
30
|
1695
|
| 39 | | RSKG-8F7V |
2017G655
|
17A; 5A
|
An archaeal transcription factor EnfR with a novel ‘eighth note’ fold controls hydrogen production of a hyperthermophilic archaeon Thermococcus onnurineus NA1
|
Da-Woon Bae; Sun-Shin Cha
|
英語 / English
|
Nucleic Acids Research
|
2023
|
51
|
10026
|
| 40 | | 3736-DPFK |
|
17A
|
Structural basis for cross-group recognition of an influenza virus hemagglutinin antibody that targets postfusion stabilized epitope
|
Tonouchi, Keisuke
|
英語 / English
|
PLoS Pathogens
|
2023
|
19
|
|
| 41 | | 3715-3961 |
|
17A
|
Structural insight into the activation of an Arabidopsis organellar C-to-U RNA editing enzyme by active site complementation
|
Sachiko Toma-Fukai
|
英語 / English
|
Plant Cell
|
2023
|
35
|
1888
|
| 42 | | N1ER-TZCN |
|
17A
|
Characterization of two rice GH18 chitinases belonging to family 8 of plant pathogenesis-related proteins
|
Tanaka, Jun
|
英語 / English
|
Plant Science
|
2023
|
326
|
|
| 43 | | ZPXW-B44B |
2016G617; 2016G606; 2018G636; 2018G634; 2020G658
|
NW12A/NW12A; 5A/ 5A; 1A/1A; 10C/10C; 5A/ 5A; 17A/17A; 10C/10C; 5A/ 5A; 17A/17A; NW12A/NW12A
|
Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4 / 新規人工酵素Syn-F4鉄エンテロバクチンエステラーゼの結晶構造と活性
|
栗原 航大/Kodai KURIHARA; 梅澤 公二; Ann E. Donnelly; Brendan Sperling; Guanyu Liao; Michael H. Hecht; 新井 亮一/Ryoichi ARAI
|
英語 / English
|
Proceedings of the National Academy of Sciences of the United States of America
|
2023
|
120
|
|
| 44 | | M25T-J58N |
2016G091, 2018G110
|
17A
|
Protein expression and purification, molecular interaction, and X-ray crystallographic analysis of baculovirus protein PK2
|
Takeshita D.
|
英語 / English
|
Protein Expression and Purification
|
2023
|
202
|
|
| 45 | | SSMA-5CGA |
2021G606
|
17A
|
Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells
|
禾 晃和/Terukazu NOGI; 安達 友里子/Yuriko ADACHI
|
英語 / English
|
Protein Expression and Purification
|
2023
|
208-209
|
|
| 46 | | G03Y-ZY8N |
|
17A
|
Periplasmic chitooligosaccharide-binding protein requires a three-domain organization for substrate translocation
|
Ohnuma T.
|
英語 / English
|
Scientific Reports
|
2023
|
13
|
|
| 47 | | 7J04-0AJ3 |
|
1A, 17A
|
Structural bases for the Charcot-Marie-Tooth disease induced by single amino acid substitutions of myelin protein zero
|
Sakakura M.
|
英語 / English
|
Structure
|
2023
|
31
|
1452
|
| 48 | | 2NM3-63VT |
|
17A, 1A
|
Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect akuBGL activity
|
Xiaomei Sun
|
英語 / English
|
eLife
|
2023
|
88939.3
|
|
